Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0137 |
Symbol | dapF |
ID | 1218940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 159639 |
End bp | 160517 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637236494 |
Product | diaminopimelate epimerase |
Protein accession | NP_518258 |
Protein GI | 17544856 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTGC ACTTCACCAA GATGCACGGC GCCGGCAACG ACTTCGTCGT GCTCGACGGC ATCGCGACCC CGATCGATTT CACCCCCGAA CAGTGGCGCG CCATCGCCGA CCGCCACTTC GGCGTGGGCG CGGACCAGCT GCTGCTGGTG GAGCGTTCCA CCCGCCCCGA CGTCGATTTC CGCTACCGCA TCTTCAACCA CGACGGCGGC GAGGTGGAGC AGTGCGGCAA CGGCGCGCGC TGCTTCGTCA AGTTCGTTAC CGACCGTGGC CTGACCGACA AGCGCACCAT CCGCGTCGAA GTGATGAACG GCATCTCCAC GCTGACGATG CAGCCCGACG GCCAGGTGAC GGTCGACATG GGCGCCCCGG TGTTCGAGGC CGCGCGCCTG CCCTTCGTGC CCGATGCCCT GCCCACCCGC GTGGAAGGCC GCGACACGCA GCACGCCCTG CAGATCAACG GCCGCACCGC GTGGCTGTCC ACCGTGTCGA TGGGCAACCC GCACGCGGTG CAGGTGGTCG ATGACGCGGA AGCCTTCCCG GTGCGCGAAG ACGGCCCGTT GATCGAATCG CACGCTGTGT TCCCGAGGCG CGTGAATGCC GGCTTCATGG AGATCGCCGA CCGCCACGCC ATCCGCCTGC GCGTGTACGA GCGCGGCGCC GGCGAGACGC TGGCCTGTGG CACGGGCGCC TGCGCGGCGG CGGTGGCGGG GATCCGGCGC GGCCTGCTGG ATTCGCCCGT CAAGGTGACC ACGCACGGCG GCGACCTGAC CATCGCCTGG GCCGGCGAGG GCGAGCCGGT GATGATGACC GGCCCGGCCA CGACCGTGTT CGAAGGCACG CTGGACCTGG ACGCACTGAA GCAGACCGCC GCGCACTGA
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Protein sequence | MKLHFTKMHG AGNDFVVLDG IATPIDFTPE QWRAIADRHF GVGADQLLLV ERSTRPDVDF RYRIFNHDGG EVEQCGNGAR CFVKFVTDRG LTDKRTIRVE VMNGISTLTM QPDGQVTVDM GAPVFEAARL PFVPDALPTR VEGRDTQHAL QINGRTAWLS TVSMGNPHAV QVVDDAEAFP VREDGPLIES HAVFPRRVNA GFMEIADRHA IRLRVYERGA GETLACGTGA CAAAVAGIRR GLLDSPVKVT THGGDLTIAW AGEGEPVMMT GPATTVFEGT LDLDALKQTA AH
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