Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0075 |
Symbol | rrmB |
ID | 1218877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 85330 |
End bp | 86655 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637236431 |
Product | putative RNA methyltransferase (SUN protein) |
Protein accession | NP_518196 |
Protein GI | 17544794 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.191133 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTGC CGCCCGATTC CCTCGCCCAT GCCCTGTCGC TCGCCGCTGC CGTCATCGGC CGGTTGCGGC AGGGGACGGC GCTGCCGCAG GCCATCGATG CCGCATGCCC GGGCCAGCCC GGTGCCACGC GTGGCGCGGT GCAGGATCTC GCCTATCGCG CCACACGCTG GCTCGGCAGC GCCGATTGGC TGATCCGCAC GCTGATTCCG CGCCCGCCCG CCGAGGGTGC GGCCAACCTG TTGCGCGTGG CGCTGGCTCA GCTGCTCGAC ACGCCGCAGC CCTATGCACC TTTCACGGTC GTCGATCAGA CCGTGCGTGC TGCCTCGGCC GACCCGAAGC TCGCGCACGC CAAGGGCATG ATCAACGGGG TGTTGCGGCG TTTCCTGCGG GAGCAGGCGG ACCTGACGGC CGCCATGCAG GCCGATCCGG TCGCGGCGAT CAACTATCCG GCCTGGTGGA TCGGTGCCGT GCGCGAGGCC TACCCCGAGG CGTGGCAGGC CATCCTGGCG GCCGGCAACC GTCGTCCGCC GATGGTGTTG CGCGTCAATC CGAGCCGCGT GCCGGTCGAG GCCTACCTCG CGCGGCTGGC CGAGGTCGGC ATCGAGGCCG AACGCATCGG CGCGCAGGCC GTGCGCCTGG CGCGCGCGAT GCCGGTGGGC GATCTGCCCG GCTTCGCCGA GGGCGATGTC TCGGTGCAGG ATGCGGGCGC GCAACTCGCG GCGGCGCTGC TCGATGTGGC GCCCGGCCAG CGTGTGCTGG ATGCCTGCGC CGCGCCGGGC GGCAAGACCG GCCATCTGCT GGAGCTCGCC GACGGCCTGG ACGTGGTCGC GCTCGAATCC GATGCCGCGC GCGCCGCGCG CATCGGCGAG AACCTGGCGC GGCTGGGGCA GACCGCCACC GTTTGCGTGG GCGACGCGGC CAAGCCCGAT GCATGGTGGG ACGGCCGCCC GTTCGACCGC ATCCTGGTCG ACGTGCCGTG CTCCGCGGCG GGCATCGTGC GGCGTCATCC GGACATCCGC TGGCTGCGCC GTCCGGCCGA TCTGCCTGCG CTGGCCGCGC TGCAGCGGGA CATCGTGAGC GCGCTATGGG CATGCCTGAA GCCCGGTGGC AAGCTGGTTT ATGTCACCTG TTCGATTTTC CCGACGGAAG GCGAGGCCCA GGCCCGATGG TTTGAAAGCC GTCTGCAAGA TGCGATACGA TTGCACGCGC CCGGCCAGTT GCTGCCGGCC ATGCCCGAGG CGGCTGGCGG CTTCGTTCCT GGCGTCTCAT CCCTGCCGCT CGACCACGAC GGCTTCTATT ACGCGGTGTT CCAGAAACGG CCCTGA
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Protein sequence | MRLPPDSLAH ALSLAAAVIG RLRQGTALPQ AIDAACPGQP GATRGAVQDL AYRATRWLGS ADWLIRTLIP RPPAEGAANL LRVALAQLLD TPQPYAPFTV VDQTVRAASA DPKLAHAKGM INGVLRRFLR EQADLTAAMQ ADPVAAINYP AWWIGAVREA YPEAWQAILA AGNRRPPMVL RVNPSRVPVE AYLARLAEVG IEAERIGAQA VRLARAMPVG DLPGFAEGDV SVQDAGAQLA AALLDVAPGQ RVLDACAAPG GKTGHLLELA DGLDVVALES DAARAARIGE NLARLGQTAT VCVGDAAKPD AWWDGRPFDR ILVDVPCSAA GIVRRHPDIR WLRRPADLPA LAALQRDIVS ALWACLKPGG KLVYVTCSIF PTEGEAQARW FESRLQDAIR LHAPGQLLPA MPEAAGGFVP GVSSLPLDHD GFYYAVFQKR P
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