| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0073 |
|---|
| Symbol | |
|---|
| ID | 1218875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 83613 |
|---|
| End bp | 84260 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637236429 |
|---|
| Product | transporter transmembrane protein |
|---|
| Protein accession | NP_518194 |
|---|
| Protein GI | 17544792 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.163554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC TGGGCATCAT CAACCTGCCG GTCTTCATGC TTGCCGTGCT CCTGCTCAAC
GTGACGCCCG GGCCGGATAC CGCCTATATC GTCGGGCGCA GCGTGTCGCA GGGGCGCGCG
GCGGGGCTGA TGTCGAGCCT GGGTGTGTCG GCGGGGTGCT GCGTGCACGT GCTGGCGGTG
GCCTTCGGGC TGACGGCGCT GCTGGCCGCG TCGGCCGTGG CGTTCACGGT GATCAAGGCG
ATCGGCGCGG CGTATCTGAT CTATCTGGGC GGCCGCATGC TGCTGGCGCC GGCCGGGAGC
GACGACGCGC CCGTGGCGCA AGCGGTCGCT ACTGCCCGCC GTCCGCTGCG CGCGCTGTTC
ATGCAGGGGT TCCTGACCAA TGTGCTGAAC CCGAAGGTGG TGCTGTTCTT CCTGTCGTTC
TTCCCGCAAT TCGTCGATCC GGGCGCGAGC CACAAGGCGG CGGCGTTTCT GGTGCTGGGG
GCGGTGTTCA TCGTGATGTC GACGGCATGG AACAGCCTGG TCGCCTGGGT GGCGGCCAGC
GTCACGCGCC GGGTGGCGGG CAAGCCGGGT ATCAAGCGCT GGCTCGACCG CGTTGTCGGG
ACGGCGTTCA TCGGGCTGGG GGCGCGGCTG GCGTTCACGA CCCGATGA
|
|---|
| Protein sequence | MSTLGIINLP VFMLAVLLLN VTPGPDTAYI VGRSVSQGRA AGLMSSLGVS AGCCVHVLAV
AFGLTALLAA SAVAFTVIKA IGAAYLIYLG GRMLLAPAGS DDAPVAQAVA TARRPLRALF
MQGFLTNVLN PKVVLFFLSF FPQFVDPGAS HKAAAFLVLG AVFIVMSTAW NSLVAWVAAS
VTRRVAGKPG IKRWLDRVVG TAFIGLGARL AFTTR
|
|---|
| |