Gene RSc0032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0032 
Symbol 
ID1218834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp37895 
End bp38758 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content72% 
IMG OID637236388 
Producthypothetical protein 
Protein accessionNP_518153 
Protein GI17544751 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACGG CCCGGGCGCC CCGGGCGCGC CATGCCGGGC GCGCCTGGCC GCGAGAGGTT 
GCGGCGCCCG GCCTGCCGCG GCGGCAGCCG GTCTGGCTGT TCGACCTCGA CAACACCCTC
CACCACGCTT CGCACGCGAT CTTCCCGCAG ATCAACCGTC TGATGACGGC CTACGTGGCG
CGCGTGCTCG GCACCGACGA GGCCACCGCC AGCCGGGTCC GCGTCGACTA CTGGCGCCGC
TACGGCGCCA CCATCCTCGG CATGGTGCGC CATCACGGCG TCGATCCCGA CGATTTCCTT
GCCCAGGCCC ACCGCTTCGA CGACCTGCGC GCCATGGTGC GCGCCGAACG CGGCCTGGCC
CAGCTGCTGC GCGCGCTGCC CGGGCGCAAG ATCCTGCTGA CCAACGCTCC GGCCGCGTAC
GCGCGCGAGG TGGTGCGCCA CATCGGCCTG CGGCGCGCCT TCGCACGCGA GATCGCCGTC
GAGCACATGT GGGTGCACCG GCGCCTGCGC CCCAAACCCG ACCCGCTGAT GCTGCGCCGG
CTGCTGGCGC GCGAACGCAT CGCGCCGTCG CGCGCCATCC TGGTCGAAGA CACGCTCTCG
CACCTCAAGC GCTACCGGCG CCTGGGGTTG AGCACGGTGT GGGTCACCGG CTACCTGCGG
CGCGTGGCGC CCGGCGTGGT CCCGGCAGCG GCCGCCGATG CACTGCACCC GATGCAGGCC
GCCGCGCTCG GCGCGCGTGC AAATTCGCCA CAACGGCAAC CCGCCGCGCC GATTTTGTTC
GCCAACCGGC CCGGCTATGT GAGCGTGAAA GTAAAATCGG TGCTTCAACT ACAACGAAGG
CTTGTCCGCC ACGGTCGTGG TTAG
 
Protein sequence
MRTARAPRAR HAGRAWPREV AAPGLPRRQP VWLFDLDNTL HHASHAIFPQ INRLMTAYVA 
RVLGTDEATA SRVRVDYWRR YGATILGMVR HHGVDPDDFL AQAHRFDDLR AMVRAERGLA
QLLRALPGRK ILLTNAPAAY AREVVRHIGL RRAFAREIAV EHMWVHRRLR PKPDPLMLRR
LLARERIAPS RAILVEDTLS HLKRYRRLGL STVWVTGYLR RVAPGVVPAA AADALHPMQA
AALGARANSP QRQPAAPILF ANRPGYVSVK VKSVLQLQRR LVRHGRG