| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0030 |
|---|
| Symbol | |
|---|
| ID | 1218832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 35476 |
|---|
| End bp | 37005 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236386 |
|---|
| Product | putative transcription regulator protein |
|---|
| Protein accession | NP_518151 |
|---|
| Protein GI | 17544749 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAC ATTCCCCCGC CCATCGCGCC AGCATGCTGG TGGACTACCT GCAGCGCCGC
TTCGACCGTG CCGGCCCCGG CGGCGAGCCC GACCACCGCC GCCTCTACCG CATGCTGCAG
GAAGGCATCC TGCGCGACGA GCTGCAGCCC GGCACGCGCC TGCCCTCCTC GCGGCAGCTG
GCGGCGGAGC TGGGCATCGC GCGCAACACC GTGATCCATG TCTACGAGCA ACTGGGCGTG
GAGGGCTATG TGTCGGCGGG CGTGGGCAGC GGCACCTTTG TCGCCGATAC CGTGCCGGAC
CGGCTCGATG CCGCGCCGCC GCCGGCCGCC GCGCCCGTCA GCATCAGCGA AGCGGCGATG
CCCGCGGCGC CCATGCTGTC TTCGCGCGGC CGGGCGCTGG TGCGCGATGC CGGTGCGAGC
TCGCGCCAAT GGGGCGCCTT CATGCCGGGC GTGCCCGAGG TGCGGATGTT TCCGGCGCGG
ACCTGGTCGC GGCTGCACAA CCGGCTGCTG CGCAAGCCGT CGCCGGCGCT GCTGACGTAC
CCGGTGGGCG CCGGCTACCT GCCGCTGCGC ACGGCGCTGG CCGACTACCT GCGCACCGCG
CGCGGCGTGC GCTGCGAGCC GGAGCAGATC ATCATCACCG CCGGCATTCA CCCGTCGCTG
CAGCTGATCG CGCAGTTGCT GTGCGACGCC GGCGACAGCG CGTGGATCGA AGACCCCGGC
TACTGGGGCG TGCGCAGCGT GCTCACCGCG GCCGGCGTGC GCACCGTGCC GCTGCCGGTG
GACGACGAGG GCATGCGCTT CGAGGCCGCC GGACGCCGCC AGCGCGGCAG GCCGCCCAAG
CTGATGGTGG TGTCGCCCTC GCACCAGTAC CCGCTCGGCT CGGTGATGAG CCTGGCGCGC
CGCCGCCAGC TGCTGGCCAC CGCGCAGGCC ACCGATGCGT GGATCGTCGA GGACGACTAC
GACAGCGAGT TCCGCTACGG CAGCCGCCCG CTGCCGTCAT TGCAGGGGCT GGACGAGGGC
GGGCGCGTGC TCTACATGGG CACTTTCTCC AAGGTGCTGT TCCCCAGCCT GCGCATCGGC
TACCTGGTGG TGCCGCCTGC CTTGGCCGAG GCCTTTGCGA CAGGGCTGTC GGAGATGTTC
CGCGGCGGGC AGATCCTGAC GCAGGCAGTG CTGGCCGAGT TCATCGCCGA GGGGCATTTC
GTGTCGCACA TCCGGCGCAT GCGCGGCGTC TATGCCGAGC GGCGCGAAAC GCTGCTCGAG
GCCATTCGCC GCGAGTTCGG CGAGGCGCTG CCGGTGCACG ACGGCGCGTC CGGCCTGCAC
CTCGTGCTGG GCCTGCCGCC GGGCACCGAC GATGTCGCCG TGGTGGAAGC GGCGCTGGCG
CGCGATGTCG TCACACGGCC GCTGTCGCGC TATTACCAGG ATGACGCGCG CCGCCAGCCC
GGGCTGTTGC TTGGCTATGG GCATGTGGAG ACTGAGGCGA TCGGGGGGCG CTTCGCGGTG
CTGGCCGAGG CGATCCGCGC GGCGGGGTGA
|
|---|
| Protein sequence | MAEHSPAHRA SMLVDYLQRR FDRAGPGGEP DHRRLYRMLQ EGILRDELQP GTRLPSSRQL
AAELGIARNT VIHVYEQLGV EGYVSAGVGS GTFVADTVPD RLDAAPPPAA APVSISEAAM
PAAPMLSSRG RALVRDAGAS SRQWGAFMPG VPEVRMFPAR TWSRLHNRLL RKPSPALLTY
PVGAGYLPLR TALADYLRTA RGVRCEPEQI IITAGIHPSL QLIAQLLCDA GDSAWIEDPG
YWGVRSVLTA AGVRTVPLPV DDEGMRFEAA GRRQRGRPPK LMVVSPSHQY PLGSVMSLAR
RRQLLATAQA TDAWIVEDDY DSEFRYGSRP LPSLQGLDEG GRVLYMGTFS KVLFPSLRIG
YLVVPPALAE AFATGLSEMF RGGQILTQAV LAEFIAEGHF VSHIRRMRGV YAERRETLLE
AIRREFGEAL PVHDGASGLH LVLGLPPGTD DVAVVEAALA RDVVTRPLSR YYQDDARRQP
GLLLGYGHVE TEAIGGRFAV LAEAIRAAG
|
|---|
| |