| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0009 |
|---|
| Symbol | |
|---|
| ID | 1218811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 6899 |
|---|
| End bp | 8443 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637236365 |
|---|
| Product | drug efflux lipoprotein |
|---|
| Protein accession | NP_518130 |
|---|
| Protein GI | 17544728 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.347699 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0645676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAAC CCATGACTTT CCGTTTGCCC GCGCTGCTGC CGGCGCTCCT ATTGGCGGCC
GGCGTGCTGT CCGGCTGTTC GCTGGCGCCG CGCTATGAGC GCCTGGCCGC CCCCGTGGCC
GGCGACTACC CGCAGGCGCC GGCCGGCTAC GGCGTGTCCG CGGACACCGC CAAGCCCGGC
GAGACCGCGC CGCGCGCCAC CGACCTCGGC TGGCGCGAGT TTTTCCCCGA CCCGCGCCTG
CAGAGACTGA TCGGCCTGTC GCTGGAGAAC AACCGCGACC TGCGCGTCGC CATCCTCAAT
ATCGAGGCGG CGCGCGCGCA ATACCGCCAG CAGATCGCCG ACCTGCTGCC GCCGATCAAC
GCGACCGCCA CCTACACGCG CAGCCTGACA CCCCAGTCGA TCTCGCAGAC CGGCCAGGAC
ATCAACACCA AGCAGTATCA GTTGGGTGTC GGTATCAGCA ACTACCAGGT CAACCTGTTC
AGCGTGGGCG ATGTGACGTC GTCCGCGCGC GCCAGCTACC TCGCCACCGA GGAGGGCCAG
CGCGCCACGC AGATCAGCCT GATCTCGCAG GTGGCCAAGG CCTACCTGAA CGAGCGCGCC
TACGCCGAGC AGCTCGAGCT GGCCCAGCAG ACGCTCAAGG GCCGCGAGGA CTACTACAAG
CTCGCCAAGC AGCGCTTCGA CGTGGGGGCC TCCTCCGCGC TGGACCTGCG CCAGAACGAG
ACGCTGGTCG AGTCGGCCCG CGTGTCGGTG GCCCAGCTGA CGCGCCAGTA CGCCCAGGCG
ACCAACGCGC TGGTGCTGCT GGTGGGCTCG CCGCTGCCGG CCGACCTGCC GCCGCCGACC
ACGGTGTCGT CAGAGAAGAT CGTCGCCGAC ATCCCGCCCG GGCTGCCGTC CGAACTGCTG
GAGCAGCGCC CCGACATCCG CCAGGCCGAG CAGAAGCTGG TCGCCGCCAA CGCCAACATC
GGCGTGGCGC GCGCGGCGTT CTTCCCGAGC CTCGGGCTGA CGTCGAACGT GGGGACGGCC
AGCACGGCGC TGCATGACCT GTTCAAGAGC GGGACGGGCC TGTGGTCGTT CGTGCCGAAC
CTGACGCTGC CGATCTTCAA CTGGGGCACC AACGTCTTCA ACCTGGACCT GACCAAGGCC
AACCAGAAGA TCGCGGTGGC CAACTACGAG AAGACCATCC AGACGGCCTT CCAGGAAGTG
TCCGACGCCC TCGTGGCGCG CGGCACGCTG GACGAACAGG TGGCCGCGCA GAAGCGCTTC
CGCGACGCGA CGGCCGAGCG CCTCACCCTG TCGGACCAGC GCTACCGCAA CGGCGTGTCG
AGCTTCCTCG ACGTGCTGGA CGCGCAGCGC GACCTGTTCA GCGCCGACCA GACCCTGGTG
CAGACCCGCC TGGCCCGCCT GACCAACGCC GTCGATCTGT ACACGGCGCT GGGCGGCGGC
CTGCAGGAGC ACAGCACCAC CGTGGCCGCA CAGCAGGCCC GGCCGACCGC CGCACCGGGC
ACCACGCCCA GCGCGTCGCC GGACATGACA ACGCCGGCCA AATAA
|
|---|
| Protein sequence | MHKPMTFRLP ALLPALLLAA GVLSGCSLAP RYERLAAPVA GDYPQAPAGY GVSADTAKPG
ETAPRATDLG WREFFPDPRL QRLIGLSLEN NRDLRVAILN IEAARAQYRQ QIADLLPPIN
ATATYTRSLT PQSISQTGQD INTKQYQLGV GISNYQVNLF SVGDVTSSAR ASYLATEEGQ
RATQISLISQ VAKAYLNERA YAEQLELAQQ TLKGREDYYK LAKQRFDVGA SSALDLRQNE
TLVESARVSV AQLTRQYAQA TNALVLLVGS PLPADLPPPT TVSSEKIVAD IPPGLPSELL
EQRPDIRQAE QKLVAANANI GVARAAFFPS LGLTSNVGTA STALHDLFKS GTGLWSFVPN
LTLPIFNWGT NVFNLDLTKA NQKIAVANYE KTIQTAFQEV SDALVARGTL DEQVAAQKRF
RDATAERLTL SDQRYRNGVS SFLDVLDAQR DLFSADQTLV QTRLARLTNA VDLYTALGGG
LQEHSTTVAA QQARPTAAPG TTPSASPDMT TPAK
|
|---|
| |