| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0005 |
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| Symbol | trmE |
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| ID | 1218807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3222 |
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| End bp | 4667 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637236361 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | NP_518126 |
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| Protein GI | 17544724 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.75194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.209412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCT CTTCCCACGC CATGACTTCG CCGACTGTTT CCGATGCGGC CTCCGCGCCG
ATCCGTACCG TGCCCATCGC GGCGATCGCC ACGGCGCCCG GGCGCGGCGG CATCGGCGTC
GTGCGGGTGT CCGGCCCGGA TGTGCGCGCC GTGATGCAGG CCGTGTGCGG GCGCCTCTTG
CCGCCGCGCC AGGCAACCTA CCTCCCCTTT CTCGACGCCG ATGGCGCGGC CATTGATCGG
GGCATCGCGC TGTGGTTTCC GGCGCCGCAT TCCTACACCG GCGAGGATGT GCTCGAGCTG
CAGGGCCACG GCGGCCCGGT GGTGATGCAG CTGCTGCTGT CGCGCTGCCT GCGGGCCGGC
CACGGCATCG GCCTGCGCGT GGCCGAGCCC GGCGAGTTCA CGCGCCGCGC CTTCCTCAAC
GACAAGCTGG ACCTGGCCCA GGCCGAAGCC GTCGCCGACC TGATCGAGGC CAGCACCGAG
GCCGCCGCGC GCTCGGCCGC GCGTTCGCTC GACGGCGTGT TCTCGCAGAC CGTGCACGCG
CTGGTCGAGC GCGTGATCCA CCTGCGCATG CTGGTGGAGG CGACGCTGGA TTTTCCCGAG
GAGGAAATCG ACTTCCTCGA AGCCGCCGAC GCGCGCGGCC AGCTCGCCGA CATCCGCGCA
CGGCTGGACG GTGTGCTGGC GCAGGCGCGC CAGGGGGCGC TGCTGCGCGA GGGCCTGCAC
GTGGTGCTGG CCGGGCAGCC CAACGTCGGC AAGTCGTCCC TGCTCAATGC GCTGGCCGGC
GCCGAGCTCG CCATCGTCAC GCCCATCGCC GGCACCACGC GCGACAAGGT GCAGCAGACC
ATTCAGATCG AGGGCATTCC CCTCAACATC GTCGATACCG CCGGCCTGCG CGACACCGAA
GACGAAGTCG AGCGCATCGG CATCGAACGC ACCTGGGCCG CCATCGCCCG CGCAGACGTC
GTGCTGCATC TGCTGGATGC GGCCGACTAC CGTGCCCACG GCCTGTCCGC CGAAGATGCC
GCCATCGACG CCCGCATCGC CGAACACGTG CCGCCGGGCG TGCCCACGCT GCGCGTCATC
AACAAGATCG ACCTGGCGGG CGCGGCTGTC CCGGGCCGCG TCGATGCGCA GCCTCCCGAG
GTCTGGCTGT CGGCGCGCGA CGGCAGCGGC ATCGAGTTGC TGCGTGCGGC GCTGCTGGAG
ATCGCCGGCT GGCAAGGCGG CGGCGAAGGC CTGTATCTGG CGCGCGAGCG GCACCTGTCG
GCGCTGCGCT CGGCCAGGGA GCACCTGACC ATCGCCGCCG ATCACGCGGA CCAGCGGGCC
CAGTCGCTCG ACCTGTTTGC CGAGGAATTG CGGCTGGCGC AGGAAGCGTT GAACAGCATC
ACGGGGGCGT TTTCCAGTGA TGATTTGTTG GGGGTGATTT TTAGCCGGTT TTGTATTGGA
AAGTAG
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| Protein sequence | MTASSHAMTS PTVSDAASAP IRTVPIAAIA TAPGRGGIGV VRVSGPDVRA VMQAVCGRLL
PPRQATYLPF LDADGAAIDR GIALWFPAPH SYTGEDVLEL QGHGGPVVMQ LLLSRCLRAG
HGIGLRVAEP GEFTRRAFLN DKLDLAQAEA VADLIEASTE AAARSAARSL DGVFSQTVHA
LVERVIHLRM LVEATLDFPE EEIDFLEAAD ARGQLADIRA RLDGVLAQAR QGALLREGLH
VVLAGQPNVG KSSLLNALAG AELAIVTPIA GTTRDKVQQT IQIEGIPLNI VDTAGLRDTE
DEVERIGIER TWAAIARADV VLHLLDAADY RAHGLSAEDA AIDARIAEHV PPGVPTLRVI
NKIDLAGAAV PGRVDAQPPE VWLSARDGSG IELLRAALLE IAGWQGGGEG LYLARERHLS
ALRSAREHLT IAADHADQRA QSLDLFAEEL RLAQEALNSI TGAFSSDDLL GVIFSRFCIG
K
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