| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0004 |
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| Symbol | |
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| ID | 1218806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1431 |
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| End bp | 3092 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637236360 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | NP_518125 |
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| Protein GI | 17544723 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.9905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.344368 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA AACGCACCAT TCTCTGGGTG ATCTTCTCGC TGTCGGTTGT CCTGCTGTTC
GACAACTGGC AACGCGCGAA CGGCCACCAG TCGATGTTCT TCCCGACGCC GCAGACGGTC
ACCACGACCG CCGCCGCACC GGGCGGTACG CCCGCGGGCG ATGTGCCCAA GGCCGCCGCG
CCGGCCGCCG CCGGCAGCCA GGCGGCCCCG GCCACCGGTG CCGTCTCGCA GACGCCGGCT
TCGGAAAAGA TCGTCGTCAC GACGGACGTG ATCCGCGCAA CGGTGGATAC GGCCGGTGCC
ATCGTCACCA AGCTTGAGCT GCTGACGCAG AAGGACCACG ACGGCAACCC GATGGTGCTG
TTCGACCGCA GCCTGGAGCG TACCTATCTG GCGCGCTCGG GCCTGATCGG CGGCGATTTC
CCGAACCACA CCACGGTGTT CACGGCGTCC GCCGGCCCGC GTGACCTGGG CACCGGCGGC
GAAGTCTCGC TCACGCTCAC CGCCGACAAG GGCGGCGCCA AGCTGGCCAA GACCTACGTC
TTCAAGCGCG GCAGCTATGT GATCGACACG CGCTTCGACG TGACCAACGA CGGTGCCGCG
CCGATCAACC CGACGCTGTA CATGGAACTG GCGCGCGACG GCGGCGCGGT GGAGCAATCG
CGCTTCTACA GCACGTTCAC CGGTCCGGCC GTCTACACCG ACACCGACCA CTATCACAAG
ATCACCTTCG CCGACATCGA CAAGAGCAAG GCTCACGTGC CGGCCCCGAC CGACAGCGGC
TGGGTGGCGA TGGTGCAGCA CTACTTTGCA TCGGCATGGA TTCCGGCGGC CAGCGCCAAG
CGCGAGTTCT ACGTCGACCG CATCGACACC AACTTCTACC GCGTCGGCAT GCAGCAGGCG
CTGGGCACGG TGGCGCCGGG CGCGAGCGTG TCGGCCACGG CACGCCTGTT CGCCGGTCCG
CAGGAAGAGC GCATGCTCGA GGGCATCACC CCGGGCCTGG AACTGGTGAA GGACTACGGC
TGGCTGACCA TCATCGCCAA GCCGCTGTTC TGGCTGCTCG AGAAGATCCA CAAGCTGCTG
GGCAACTGGG GCTGGTCGAT CGTGGCGCTG ACCGTGCTGG TCAAGCTGGT GTTCTTCCCG
CTGTCGGCCA CCAGCTACCG CTCGATGGCC AAGATGAAGG ACCTGCAGCC GCGCATGACG
GCCATCCGCG AGCGCCACAA GGGCGACCCG CAGAAGATGA ACCAGGAGAT GATGACGCTG
TATCGCACCG AGAAGGTCAA TCCGCTCGGC GGCTGCCTGC CGATCGTGAT CCAGATCCCG
GTGTTCATCG CGCTGTACTG GGTGCTGCTG TCGTCCGTGG AAATGCGCGG CGCGCCGTGG
CTGGGCTGGG TGCACGACCT GGCCTCGCCG GACCCGTTCT ACATCCTGCC GATCCTGATG
GCCGTGTCGA TGTTCGTGCA GACCCGCCTG AACCCGACCC CGCCGGACCC CGTGCAGGCC
AAGATGATGA TGTTCATGCC GATCGCGTTC TCGGTGATGT TCTTCTTCTT CCCGGCCGGC
CTGGTGCTGT ACTGGGTGGT CAACAACTGC CTGTCGATCG CGCAGCAGTG GTCGATCAAC
CGCATGCTGG GCACCAATAA GAAGGCCGCG GCCGCCAAGT AA
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| Protein sequence | MDIKRTILWV IFSLSVVLLF DNWQRANGHQ SMFFPTPQTV TTTAAAPGGT PAGDVPKAAA
PAAAGSQAAP ATGAVSQTPA SEKIVVTTDV IRATVDTAGA IVTKLELLTQ KDHDGNPMVL
FDRSLERTYL ARSGLIGGDF PNHTTVFTAS AGPRDLGTGG EVSLTLTADK GGAKLAKTYV
FKRGSYVIDT RFDVTNDGAA PINPTLYMEL ARDGGAVEQS RFYSTFTGPA VYTDTDHYHK
ITFADIDKSK AHVPAPTDSG WVAMVQHYFA SAWIPAASAK REFYVDRIDT NFYRVGMQQA
LGTVAPGASV SATARLFAGP QEERMLEGIT PGLELVKDYG WLTIIAKPLF WLLEKIHKLL
GNWGWSIVAL TVLVKLVFFP LSATSYRSMA KMKDLQPRMT AIRERHKGDP QKMNQEMMTL
YRTEKVNPLG GCLPIVIQIP VFIALYWVLL SSVEMRGAPW LGWVHDLASP DPFYILPILM
AVSMFVQTRL NPTPPDPVQA KMMMFMPIAF SVMFFFFPAG LVLYWVVNNC LSIAQQWSIN
RMLGTNKKAA AAK
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