Gene MCA2994 details

Gene Information

• Locus tag: MCA2994
• Symbol: rpoD
• ID: 3103408
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 3166790
• End bp: 3168589
• Gene Length: 1800 bp
• Protein Length: 599 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637172119
• Product: RNA polymerase sigma-70 factor
• Protein accession: YP_115383
• Protein GI: 53802939
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCCAG AACAGCAGCA GCACCAGCTT AAGGAACTTA TTGCTAAGGG CAAGATGCAG 
GGCTACCTCA CCTTTTCCGA GGTCAACGAT CATCTCCCCA GCGACATCGT CGATCCCGAG 
CAGATGGAAG ACATCATCTG CATGATCAAC GACATGGGAA TCGAAGTCCA CGAGGATGTC 
CCCGACAACG AAGACCTGAT CCAGGACACG GCGGTGGTGG CCGAATCCGA CGAGGATGAA 
GCCGCGGAAG TCGCAGCGGC GCTCGCTTCG TCGGTCGATA CCGAACTTGG GCGCACCACC 
GATCCCGTGC GGATGTACAT GCGCGAAATG GGAACCGTGG AGCTGCTGAC CCGCGAAGGC 
GAGCTGAGCA TCGCCAAGCG CATCGAAGAG GGGCTCAACA TCGCCGCCAA CGAACTAGTA 
CGGTTCCCGG CAGCCATGGA ACACTTCCTC AAAGCCTTCG AGACCGTCGA CAACGGCGAA 
CTCAGACTCT CCGATCTGAT CTCCGATTTC TTCGATCCCG CCGCGGCAGA CACGGTGGCA 
ACCGAAGACG ACGCCGAAGC GGAAATCATC GATGAAGGCG ATACCGGCCC CGACCCCGAG 
CTGGTAAAAG AAAAATTGGC GGCTTTCCGC AAGCTGCACA AGGCGGCCGT CACCGCCCAC 
CACAAGTACG GCTACGGCCA CGAGAAGACG CAGAAGTCGT TCGATGCCCT GGCCACGGCC 
TTCATGGAAT TCAAGAAGAC CCCGCAGTTC TTCAAGGAAC TGACCGATAC GCTGCGCGAC 
ACCGTGGCGA AAATCCGCGA GCAGGAACGC GCGCTCACGG ACATCTGCGT GACCAAAGGG 
AAGATGCCCA AGGCGGAGTT CATAGAGTCG TTCAGCGGCA GTGAAACCGA CGAGGGATGG 
CTCGACCGGG TATGCGATCC GGCGAAACCC TATGCGGCTG CGATCAAGGC CCATGCGGAG 
GAAATTCGCC GGATTCAGGC CAAACTGGCT CAAATCGAGA AGGAGAACCG GCTCGACATC 
GCGCTCATCA AAGACATTCA TCGCCGAGTG TCCGCGGGGG AGAACCAGGC ACGCCTGGCC 
AAACGCGAAA TGATCGAAGC GAACCTTCGC CTCGTCATCT CCATCGCCAA GAAATACACC 
AACCGGGGAC TGCAGTTCCT GGACCTGATC CAGGAAGGCA ACATCGGCCT GATGAAGGCG 
GTGGACAAGT TCGAGTACCG GCGCGGCTAC AAGTTTTCGA CTTACGCAAC CTGGTGGATC 
CGCCAGGCCA TCACACGGTC CATCGCCGAC CAGGCGCGCA CGATCCGTAT TCCGGTACAC 
ATGATCGAGA CGATCAACAA GCTCAACCGC ATTTCGCGGC AAATGCTGCA GGAAATGGGG 
CGCGAACCGA CGCCAGATGA ACTCGCCGCA CGCATGGACA TGCCGGAAGA CAAGGTGCGC 
AAGGTGATGA AAATCGCCAA GGAACCCATT TCCATGGAGA CCCCCATCGG CGACGACGAC 
GATTCGCACC TGGGGGACTT CATCGAGGAC TCCCGCGTCC TGTCACCGGT CGAGCATGCC 
ACCGTGGCCA GCCTGCGCGA AACCACCCAA CAGGTGCTTG CCGGACTGAC CGCCCGGGAG 
GCGAAGGTAC TCCGGATGCG TTTTGGCATC GACATGAACA CCGACCACAC GCTGGAAGAG 
GTCGGAAAGC AGTTTGACGT GACGCGTGAA CGCATCCGCC AGATTGAAGC CAAAGCCCTG 
CGCAAATTGC GCCACCCGTC ACGGTCCGAA CAGCTGCGCA GCTTTCTGGA CATCGAATGA 

 

Protein sequence

MTPEQQQHQL KELIAKGKMQ GYLTFSEVND HLPSDIVDPE QMEDIICMIN DMGIEVHEDV 
PDNEDLIQDT AVVAESDEDE AAEVAAALAS SVDTELGRTT DPVRMYMREM GTVELLTREG 
ELSIAKRIEE GLNIAANELV RFPAAMEHFL KAFETVDNGE LRLSDLISDF FDPAAADTVA 
TEDDAEAEII DEGDTGPDPE LVKEKLAAFR KLHKAAVTAH HKYGYGHEKT QKSFDALATA 
FMEFKKTPQF FKELTDTLRD TVAKIREQER ALTDICVTKG KMPKAEFIES FSGSETDEGW 
LDRVCDPAKP YAAAIKAHAE EIRRIQAKLA QIEKENRLDI ALIKDIHRRV SAGENQARLA 
KREMIEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI 
RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQMLQEMG REPTPDELAA RMDMPEDKVR 
KVMKIAKEPI SMETPIGDDD DSHLGDFIED SRVLSPVEHA TVASLRETTQ QVLAGLTARE 
AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPSRSE QLRSFLDIE