Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA1481 |
Symbol | rne |
ID | 3103735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 1573769 |
End bp | 1576426 |
Gene Length | 2658 bp |
Protein Length | 885 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637170656 |
Product | ribonuclease E |
Protein accession | YP_113938 |
Protein GI | 53804451 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00665357 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTGATCAA CGCCACGCAG CCCGAGGAAT TGCGGGTCGC GCTGGTCGAT GGACAAAAGC TTTATGACTT CGACATAGAA ATCCCCGCGA GGGAACAAAA AAAGGCCAAT ATCTACAAAG GACTGATTAC CCGCGTCGAG CCCAGCCTCG AGGCGGCGTT CGTGAACTTC GGCGCGGAGC GGCACGGCTT CCTGCCGTTC AAGGAAATCC TGCCGAAATA TCTCGGCGCC GGCGGCGAAG AGTCCGTCTC CCGGCGGGAA ATCAAAGACG TTCTCAAGGA AGGCCAGGAA GTCGTCGTTC AGGTCGAAAA AGAGGAGCGC GGCACCAAGG GCGCCGCCCT GACCACCTAC ATCAGTCTGG CCGGCAGCTA CCTCGTGCTC ATGCCGAACA ACCCCAAAGC GGGCGGTATC TCCCGCCGCA TCGAGGGCGA CGTCCGGTCC GACATGAAGG AGACACTGAG TCAGCTCCAT GTTCCCGAAG ACATGGGCGT CATCATCCGC ACGGCGGGCG GTGGCAAGAC GGTCGAAGAA CTGCAGTGGG ACCTCAATTA TCTGTTGCAG CTGTGGGAAG CGATCGAACG CTCGACGCGG GAAAAACCGG CGCCGTTCCT GATTTTCCAG GAAAGCAACG TCATCATCCG AGCTCTGCGC GACCATCTGC GGGGTGACAT CGACGAAATC CTGGTCGACA ACCCTTCGAC TTTCAGGCTG GTGCACAGCT TCCTGCAACA GGTCATGCCC CAGTTCATCA ACAAGGCGCG CCTGTATCAG GACAACGTAC CCCTGTTCAG CCGTTACCAG ATCGAAAGCC AGATCGAAAC GGCCTATGCC CGCGAAGTGC CGCTGCCCTC CGGCGGCGCC ATCGTCATCG ACCATACCGA GGCGCTGACG ACCATCGATA TCAATTCGGC GCGGGCCACC AAGGGCGGCG ATATCGAAGA AACCGCGCTG AACACCAATC TCGAGGCCGC CGACGAGATC GCCCGCCAGT TGCGCCTGCG CGACCTGGGG GGATTGTTCG TGATCGATTT CATCGACATG ATGGCGGCCC GCAACCAGCG TGCGGTGGAG AACCGCCTGC GTGAGGCAGT GCGCCTCGAC CGGGCGCGCA TCCAGCTCGG TCGGATTTCC CGTTTCGGCC TCATGGAAAT GTCACGCCAG CGCCTTAGAC CTTCGCTCAC GGAGACGGCG CTCCTGACCT GCCCGCGCTG CAAAGGCCAG GGGACGATAC GCAGCGTCGA ATCGCTGGCC CTGTCCATCC TCCGCGTCCT GGAGGAGGAA ACGATGAAAA AGAACACCGA CCGGATCATC GCCCAGCTGC CAGTCGAGTC GGCCACCTAT CTGCTGAACG AGAAACGCGC GGCGATCCAG CAGATCGAGG TCCGGCACAA TGTGGCCATC ACCATCATCC CCAATCCGCA CCTCGAAACT CCCAACTATG ATATCCAGCG GATCCGGAGT GGCGGAGCCG GTGGGGAAGA AGAGATACGC AAGAGTAGTT ACCAGCTCAT TGCCGAGAAA TCGCCCGAGA CTCCCAAGCC GACACGAACG CCCAGTGCCG CCGCGGAGGC TCCGGCGGTG CGGGAATTCA TTCCCACCGC CCCGCAGCCG GGCGGCGGCG ACCAGCGGGC CCAAGCTCAG CCAGGCCAGC CTGGCGGCGG GCTGATCAAA CGCTTCCTCA ACATCCTGAC CGGTCAACGC ATCGAGGACC AGCCTCCCTC TCAGGAGGCG TCTCAGCCGT CCGCCGGACT GCCGTTACCC GTACCTTTCG TACAGACGGG CAAGACGGCC GGCGCGCAGG CGGAAACGGG AGCCCCCCCG ACCGACGACA GCGATCACTC CGGAAGCCAG CGGCGCCGCG ACCACCGGGA CGGCAGCAGG CGGGGGGGCA ACCGCCGGAA GCATCCCGCC CAGCGGGACG AAACGACTGA CCGACGCCAC GGCGGGCCGA CTTCGGACAC CGAAGCCATC CAGGCTTCCG GAACCGAGGA ACAGCCCCAG ACGTCGACTG ACCAAGAGGA GCGGCCCAAA TCCGAGGGGG GCCGCGGTCG CCGCCGGGAC GGCAGAGGCC AGCGCCGGCG GGCGTCGGTT CAGCCGATCG TGGAAGCGCC GACGGAGGGC ATCGCGGATG AGACGGTCGT CTCTGAAATT CCTCCAGCGG GCGCGGACTT GAGCGACCCT GTGCCTGCCG CCGATTCCGG CGAAACTCCC GACCAGGGAG ATGCCGTCGG CCACGAGCCG GCCGAAGGAG ACAGGGTGGA TGCGGAACTC CGCCTGCGGA CTCCACGGTC GCGGCGGGGC GGCGTGAGAC GGCGTGGCCG CGGCAGGCGG GACCGTCGCC CGGCAGCACC GGGTGAGCAG GGAAGTGAAG CTCTCGAACC GGTCGGCATC GATTGGGGCG ACGACACCGC CAGAGGCCGC GGCGTGGAAG CCGAAGCCAA TCCGCCCGGC CCGGCGGAAA TCGACGATCA CCGGCGCGAG CCGTATTCAT CCCCGGCGGA ACGGAAAGAG ACGGCGGAAT CCGATGAATA CCGTGCGCCG GGTCTGCCGC CCAGAGCATG GCAGTCCCCC GCAGCGGACC TCGCCGCCCG GGACGAGCAC CCCGATTCTC CGCCGCCGGT CGAACGCGGC GCCGGCTCTT CGGATTGA
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Protein sequence | MKRMLINATQ PEELRVALVD GQKLYDFDIE IPAREQKKAN IYKGLITRVE PSLEAAFVNF GAERHGFLPF KEILPKYLGA GGEESVSRRE IKDVLKEGQE VVVQVEKEER GTKGAALTTY ISLAGSYLVL MPNNPKAGGI SRRIEGDVRS DMKETLSQLH VPEDMGVIIR TAGGGKTVEE LQWDLNYLLQ LWEAIERSTR EKPAPFLIFQ ESNVIIRALR DHLRGDIDEI LVDNPSTFRL VHSFLQQVMP QFINKARLYQ DNVPLFSRYQ IESQIETAYA REVPLPSGGA IVIDHTEALT TIDINSARAT KGGDIEETAL NTNLEAADEI ARQLRLRDLG GLFVIDFIDM MAARNQRAVE NRLREAVRLD RARIQLGRIS RFGLMEMSRQ RLRPSLTETA LLTCPRCKGQ GTIRSVESLA LSILRVLEEE TMKKNTDRII AQLPVESATY LLNEKRAAIQ QIEVRHNVAI TIIPNPHLET PNYDIQRIRS GGAGGEEEIR KSSYQLIAEK SPETPKPTRT PSAAAEAPAV REFIPTAPQP GGGDQRAQAQ PGQPGGGLIK RFLNILTGQR IEDQPPSQEA SQPSAGLPLP VPFVQTGKTA GAQAETGAPP TDDSDHSGSQ RRRDHRDGSR RGGNRRKHPA QRDETTDRRH GGPTSDTEAI QASGTEEQPQ TSTDQEERPK SEGGRGRRRD GRGQRRRASV QPIVEAPTEG IADETVVSEI PPAGADLSDP VPAADSGETP DQGDAVGHEP AEGDRVDAEL RLRTPRSRRG GVRRRGRGRR DRRPAAPGEQ GSEALEPVGI DWGDDTARGR GVEAEANPPG PAEIDDHRRE PYSSPAERKE TAESDEYRAP GLPPRAWQSP AADLAARDEH PDSPPPVERG AGSSD
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