Gene MCA1284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1284 
SymbolrfbC 
ID3102530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand+ 
Start bp1367904 
End bp1368461 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content62% 
IMG OID637170462 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_113746 
Protein GI53804351 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.904842 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTCG AACAGACGGA TTTGCCCGGT GTACTGCTGA TCTCGCCCAA GGTGTTCGGC 
GACGCCCGTG GGTATTTCAA AGAGACCTGG AGCCGGCAGC GCTACCAGGA CGCCGGGCTG 
CCCGGCGACT TCGTGCAGGA CAATCTGTCC TATTCGCGTA AGGGCATCCT GCGCGGCCTG 
CATTTCCAGA ATCCCCGTCC CCAGGGCAAG CTGGTGCAGG TGCTGCAGGG CGAGGTGTTC 
GACGTAGCGG TGGACATCCG GTACGGGTCG CCGCACTTCG GCCGTTGGTT CGGTACCGTG 
TTGTCGGCGG AGAACCATCT GCAGATGTAC GTGCCGGAAG GTTTCGCCCA TGGTTTCTGC 
GTGTTGACTG AAGCCGCTCT GTTTGCCTAC AAGTGCACCG AGTATTACGA GCCTTCCTCT 
GAATTCTCGC TGCGCTGGGA CGATCCGGAC ATCGGGATCG CCTGGCCGCT GGATTCCGCG 
CCCGAACTCT CGGCCAAAGA CAGGGATGCC CCGCGGCTCC GGGATTTGCC GCAACACCGG 
CTGCCGGTCT ATCCATGA
 
Protein sequence
MNVEQTDLPG VLLISPKVFG DARGYFKETW SRQRYQDAGL PGDFVQDNLS YSRKGILRGL 
HFQNPRPQGK LVQVLQGEVF DVAVDIRYGS PHFGRWFGTV LSAENHLQMY VPEGFAHGFC 
VLTEAALFAY KCTEYYEPSS EFSLRWDDPD IGIAWPLDSA PELSAKDRDA PRLRDLPQHR 
LPVYP