Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA1123 |
Symbol | gspD |
ID | 3102943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 1178358 |
End bp | 1180613 |
Gene Length | 2256 bp |
Protein Length | 751 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637170308 |
Product | general secretion pathway protein D |
Protein accession | YP_113593 |
Protein GI | 53804514 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAAGA AGCCGGAGTA CTATCCGCGG AAGGGGGCCG TGGTCAATCC GCCGTCCGCC GGCGGTGGCG GCTACCCGGG TTCCGCCACC ACGTCCTCCG CTGGCGGCGG TGCGACCGGG AAAGGAGGCG GCCGCACCTC GCCCCGGAAA GAAGGCAAGT ACACCCTCAA TTTCGACGAC GCCGACCTGT CGGAAGTCAC CAAGGTCATC CTCGGCGATA CGCTGAAGGT GAATTACGTC CTGAGTCCCA AGGTCACCGG CAAGGTGAGT CTGCAGACCA CCCGGCCGCT GACCGAGGAC GAGATGATCC CGACGCTGGA GACCCTGCTG CGGATGAACG GGGCGGCGCT GATCCGGGAG GGCGGCATGT ACAAAATCGA ACCCGACGCC CAGGCGGCGA TCAGCGCCTC CGGCCCCGGG GTCGGGCTGG GAATGATGGA GCCGGGTTAC CAGTTGCGGG TCATTCCTTT GCGTTACATC AGCGCCGCGG AAATGCAGAA AGTGCTGGAG CCCATCATGC CGCCCAAGGC CGTGCTGCGG ATGGACGAGA CCCGCAATCT GGTCATGGTG GCCGGTACGG CGGAAGAGTT GGGCGGCGTC ATGGAAGCGG TGCAGATTTT CGACGTCGAC TACATGCGGG GCATGTCCGT GGCCCTGTAT CCGGTCAAGA ACGCCGACGT GCCGACCATC GCCGACGAAC TGACCAAGGT CCTCGGGCTC GGCGGCAAGG GCGCCATGGG CAACGTGCTG CGCATCCTGC CGATCGAACG CCTCAACGCC ATCCTCGCCG TGGCTCCTGA GATGCATCTC CTGCACGAAG TGCAGGACTG GATCGAACGG CTCGACCGCT ACAACACCAC CCGTACCGGC AATGTCCACG TCTATCGCTG CCAGCACGTG GATGCGGGCG AGCTTGCCCA CACGCTGGGC GGGATCTTCG GAGGCGGCGC GGGACGGCAG GGGCCTTCGC TGGCGCCAGG GCTGACCGGA ATGGACGTCG GCAGTGGCAT ATCGAGCGCC TTCGGCTCGG CCTCTGCGAC CGCAGGCGGT TTTGGGGGGT CTTCTGCCGG CTATGGCGGC TCGGGAGGAT CCTTCGGCGG CTCGGGGAGT TCATTTGGAA GTTCCGGCAG CAGCGGTTCC AGCATGGGGA GCACGACGGG CAGCATGGGA ACTTCCGGCA GCAGCGGCGG ACTCGGCCGC TCCGGCAGCG GTGGTTTGGG CGGTTCTGGC GGCGGCCTGG GTACCAGTGG GGGCAGTTTC GGCGGCGCGC GGTCGGGTGC GGGCGGTCAG GGAGCAAGCA TGACCCAACT CGGCAACAAT GCGCGGGTCG TCGCCGATCC TGCCAACAAT GCGTTGATCG TGATCGCCAA GCCCCAGGAC TGGAAGGAGA TCGAAGCGGT GATCAAGGCC TTGGATGTCT TGCCGCTCCA AGTGCTCATC GACGCCACCA TCGTCGAGAT CAGCCTGAAA AACGATCTCC AGTACGGATT GAAGTGGCTG ATCAGCAGCG GTAGCAGCAC GGAGGCACTG GGCAGCCCGC TTGCTGCCTT GGTAAAGGAT TTCATCAACG GGGCCGCATC CGCGAGTGGG GGATTCAGCT ATGCGCTGAT CGCCAACGGC GGTAATGTCA AGGTTCTGCT TAACCTGTTG GCGCAGGAAA ATCTGGTCAA TGTGATTTCC TCACCTTCGC TCATGGTTCT GAACAATCAA CAGGCGAAGA TCAATGTCGG TGATCAGGTA CCGGTGCTAA CGGGTACGAC GGCCAGCGCG ACCATCGGTA CCACCCAGTT CAATCAATTC CAGCAGCAGC AGTCGGGTGT CACCCTGCAA ATCCGGCCGC GGGTCAATTC AGGCGGCCTC GTTTCGCTGG AGATATTCCA GGCCATATCT ACTCCTTCTC CGGTCGAAGT CGGAAGCGGA CAGAAAACCT TCCAATTCGC CAATCGGGAA ATCCAGAGCG TCGTCGCCGT GCCCAACGGG CAGACGCTGG CCTTGGGGGG ACTGATCTCC GATAAGCGCT CCGAGACCCA GACCGGTCTG CCATACCTGA ACCAAATCCC GATGATAGGT TGGATGTTCG GGTCCACCGA GATAAAGCCC GAGCGCACCG AGCTGGTGGT GCTCATCACG CCGCGGGTCG TGGAAAAGAA AGGCGACATC AACTCGATCA GCAACGAATT CCGCCGCAAG CTGACCAACC TATACAGAGG CGAGCCGGAC GCCCAGCCGG CGGCGGTGGA GCCTTCGACG CCGTGA
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Protein sequence | MLKKPEYYPR KGAVVNPPSA GGGGYPGSAT TSSAGGGATG KGGGRTSPRK EGKYTLNFDD ADLSEVTKVI LGDTLKVNYV LSPKVTGKVS LQTTRPLTED EMIPTLETLL RMNGAALIRE GGMYKIEPDA QAAISASGPG VGLGMMEPGY QLRVIPLRYI SAAEMQKVLE PIMPPKAVLR MDETRNLVMV AGTAEELGGV MEAVQIFDVD YMRGMSVALY PVKNADVPTI ADELTKVLGL GGKGAMGNVL RILPIERLNA ILAVAPEMHL LHEVQDWIER LDRYNTTRTG NVHVYRCQHV DAGELAHTLG GIFGGGAGRQ GPSLAPGLTG MDVGSGISSA FGSASATAGG FGGSSAGYGG SGGSFGGSGS SFGSSGSSGS SMGSTTGSMG TSGSSGGLGR SGSGGLGGSG GGLGTSGGSF GGARSGAGGQ GASMTQLGNN ARVVADPANN ALIVIAKPQD WKEIEAVIKA LDVLPLQVLI DATIVEISLK NDLQYGLKWL ISSGSSTEAL GSPLAALVKD FINGAASASG GFSYALIANG GNVKVLLNLL AQENLVNVIS SPSLMVLNNQ QAKINVGDQV PVLTGTTASA TIGTTQFNQF QQQQSGVTLQ IRPRVNSGGL VSLEIFQAIS TPSPVEVGSG QKTFQFANRE IQSVVAVPNG QTLALGGLIS DKRSETQTGL PYLNQIPMIG WMFGSTEIKP ERTELVVLIT PRVVEKKGDI NSISNEFRRK LTNLYRGEPD AQPAAVEPST P
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