Gene MCA1057 details

Gene Information

• Locus tag: MCA1057
• Symbol: ctc
• ID: 3103773
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 1108163
• End bp: 1108771
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637170242
• Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
• Protein accession: YP_113532
• Protein GI: 53804648
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1825] Ribosomal protein L25 (general stress protein Ctc)
• TIGRFAM ID: [TIGR00731] ribosomal protein L25, Ctc-form

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0348708
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAGGCA GTTTCGTATT CGAAGCCGAA TTGCGGCATC AATTGGGCAA AGGGGCATCC 
CGCCGCCTGC GTCATGCGGG CAAGGTTCCT GCGGTGCTTT ACGGAGGTGG GGGGGAGCCG 
GTGTCGCTGT TGCTGGATCA TCACAAGGTA GTCAAAAACC TGGAAAACGA GGCGACTTAC 
TCGCATGTGT TGACGATCCG TTTCGATGGT CGTGAGGAAA ACGCCATTTT GAAGGCCGTA 
CAGCGCCATC CTGCCAAACC CGTCGTGATG CACCTTGATT TCCAGCGTGT CAGCGCGGCG 
GACAAGATCC GCGTCCATGT GCCGCTCCAC TTCATCAACC AGGAGTCTTC GGTCGGCGTC 
AAGAAAGGAG GCGTGGTTTC CCATGGCATG GTGGACGTGG AAGTCGACTG TCTCCCCAAG 
GATCTGCCCG AGTATATCGA GGTCGATCTC GCCCAAGTAG ACATCGGAGG CATCATTCAT 
TTGTCGGACT TGAAACTCCC GGCGGGCGTT GAAATTCATG CGCTGGCGCA GGGTGTCGGT 
CATGATCTTC CGGTGGCGTC CGTGCATGCG CCGCGTACCG CAGAAGGCGG CGAGGGTGGC 
GCCGGCTGA 

 

Protein sequence

MVGSFVFEAE LRHQLGKGAS RRLRHAGKVP AVLYGGGGEP VSLLLDHHKV VKNLENEATY 
SHVLTIRFDG REENAILKAV QRHPAKPVVM HLDFQRVSAA DKIRVHVPLH FINQESSVGV 
KKGGVVSHGM VDVEVDCLPK DLPEYIEVDL AQVDIGGIIH LSDLKLPAGV EIHALAQGVG 
HDLPVASVHA PRTAEGGEGG AG