Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA0972 |
Symbol | rluD |
ID | 3104912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 1015882 |
End bp | 1016886 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637170160 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_113451 |
Protein GI | 53804663 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGAAAGG CCACGCAGTA TAACCTATTC ACAGACCTTT TCCTCCTCAC CTTTACCGTG ACCCGAAGCC GAATCCTGAC GACCGAAATT CCACATCATC TGGCCGGTTT GCGGCTGGAC CAGGCGCTGG CAGTACTGTT TCCGGACTTT TCCCGCGCCC GCCTGCAGAC CTGGATCAAG GACGGCCATG CACTGCTGGA CGGCATTCAA GTGGCGCCCC GCCAGAAACT GCTCGGCGGC GAGCGCGTCG AACTGCGGGC GGAGGCCGAT GCGGCCGTGG AGTGCGAGGC CGAAGCGATC CCTCTCACTG TCGTGCATGC CGACGAGTCT ATCTTCGTCA TCGACAAGCC CGCCGGCCTG GTGGTGCATC CCGCGGCGGG GCACCCGGCC GGCACGCTGC AGAATGCCCT GCTGCACCTC GATCCGGCGC TCGCGGCGAT CCCCCGCTGC GGCATCGTGC ACCGGCTGGA CAAGGACACC AGCGGCCTGC TGGTGGTCGC CCGTACGCTG GAGGCGCACA AATCCCTGGT GGATCAGCTC AAGGACCGGA GCGTGAACCG CGAATACCTG GCCCTGGTCC AGGGGATGGT CACAGCCGGG GCGACGGTGG ACGAGCCGAT CGGGCGGCAC CCCGCGGACC GCAAACGCTT CGCCGTGCGT CCGGACGGCA GGGAATCGGT GACCCATTAC CGGGTGGAGG AGCGTTTCTT GCACCATACT TTGCTGCGGG TGCGGCTGGA AACCGGGCGG ACCCATCAGA TCCGGGTCCA CATGGCGCAT CTGCATCATC CCCTGGTCGG CGATCCGGTC TATGGCGGCC GTGCACGCAT CCCGGCCGCC GCCGATCCAG TGCTGATCGA TGTCTTGCGC GGGTTTCGCC GGCAGGCCCT GCATGCGGCG CGGCTGGGGC TGATTCATCC GGAGAAGGGC GGGGAGATGG CTTGGGAATC GCCGTTGCCA CCGGATTTCG ACGCCTTGCT TCGTCTCCTG CGGAGCCTGG GGTGA
|
Protein sequence | MRKATQYNLF TDLFLLTFTV TRSRILTTEI PHHLAGLRLD QALAVLFPDF SRARLQTWIK DGHALLDGIQ VAPRQKLLGG ERVELRAEAD AAVECEAEAI PLTVVHADES IFVIDKPAGL VVHPAAGHPA GTLQNALLHL DPALAAIPRC GIVHRLDKDT SGLLVVARTL EAHKSLVDQL KDRSVNREYL ALVQGMVTAG ATVDEPIGRH PADRKRFAVR PDGRESVTHY RVEERFLHHT LLRVRLETGR THQIRVHMAH LHHPLVGDPV YGGRARIPAA ADPVLIDVLR GFRRQALHAA RLGLIHPEKG GEMAWESPLP PDFDALLRLL RSLG
|
| |