Gene MCA0972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA0972 
SymbolrluD 
ID3104912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp1015882 
End bp1016886 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content66% 
IMG OID637170160 
Productribosomal large subunit pseudouridine synthase D 
Protein accessionYP_113451 
Protein GI53804663 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAAGG CCACGCAGTA TAACCTATTC ACAGACCTTT TCCTCCTCAC CTTTACCGTG 
ACCCGAAGCC GAATCCTGAC GACCGAAATT CCACATCATC TGGCCGGTTT GCGGCTGGAC
CAGGCGCTGG CAGTACTGTT TCCGGACTTT TCCCGCGCCC GCCTGCAGAC CTGGATCAAG
GACGGCCATG CACTGCTGGA CGGCATTCAA GTGGCGCCCC GCCAGAAACT GCTCGGCGGC
GAGCGCGTCG AACTGCGGGC GGAGGCCGAT GCGGCCGTGG AGTGCGAGGC CGAAGCGATC
CCTCTCACTG TCGTGCATGC CGACGAGTCT ATCTTCGTCA TCGACAAGCC CGCCGGCCTG
GTGGTGCATC CCGCGGCGGG GCACCCGGCC GGCACGCTGC AGAATGCCCT GCTGCACCTC
GATCCGGCGC TCGCGGCGAT CCCCCGCTGC GGCATCGTGC ACCGGCTGGA CAAGGACACC
AGCGGCCTGC TGGTGGTCGC CCGTACGCTG GAGGCGCACA AATCCCTGGT GGATCAGCTC
AAGGACCGGA GCGTGAACCG CGAATACCTG GCCCTGGTCC AGGGGATGGT CACAGCCGGG
GCGACGGTGG ACGAGCCGAT CGGGCGGCAC CCCGCGGACC GCAAACGCTT CGCCGTGCGT
CCGGACGGCA GGGAATCGGT GACCCATTAC CGGGTGGAGG AGCGTTTCTT GCACCATACT
TTGCTGCGGG TGCGGCTGGA AACCGGGCGG ACCCATCAGA TCCGGGTCCA CATGGCGCAT
CTGCATCATC CCCTGGTCGG CGATCCGGTC TATGGCGGCC GTGCACGCAT CCCGGCCGCC
GCCGATCCAG TGCTGATCGA TGTCTTGCGC GGGTTTCGCC GGCAGGCCCT GCATGCGGCG
CGGCTGGGGC TGATTCATCC GGAGAAGGGC GGGGAGATGG CTTGGGAATC GCCGTTGCCA
CCGGATTTCG ACGCCTTGCT TCGTCTCCTG CGGAGCCTGG GGTGA
 
Protein sequence
MRKATQYNLF TDLFLLTFTV TRSRILTTEI PHHLAGLRLD QALAVLFPDF SRARLQTWIK 
DGHALLDGIQ VAPRQKLLGG ERVELRAEAD AAVECEAEAI PLTVVHADES IFVIDKPAGL
VVHPAAGHPA GTLQNALLHL DPALAAIPRC GIVHRLDKDT SGLLVVARTL EAHKSLVDQL
KDRSVNREYL ALVQGMVTAG ATVDEPIGRH PADRKRFAVR PDGRESVTHY RVEERFLHHT
LLRVRLETGR THQIRVHMAH LHHPLVGDPV YGGRARIPAA ADPVLIDVLR GFRRQALHAA
RLGLIHPEKG GEMAWESPLP PDFDALLRLL RSLG