Gene MCA0858 details

Gene Information

• Locus tag: MCA0858
• Symbol: lysA
• ID: 3103541
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 905765
• End bp: 907012
• Gene Length: 1248 bp
• Protein Length: 415 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637170059
• Product: diaminopimelate decarboxylase
• Protein accession: YP_113352
• Protein GI: 53804982
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0019] Diaminopimelate decarboxylase
• TIGRFAM ID: [TIGR01048] diaminopimelate decarboxylase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.168666
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCATT TCAATTATCG TGACGGCATC CTCCACGTCG AGGACGTCCC GCTGTCCGCC 
ATCGCCGAAC AGCATGGAAC GCCCTGCTAC GTTTACTCCC GCGCCACGCT GGAGCGGCAC 
TGGCATGCCT TCGACGCTGC GCTGGGCGAC TGCCCGCATC TGGTCTGCTA TGCCGTCAAG 
GCCAACTCCA ACATCGCCAT CCTGAATCTG CTGGCGCGGC TGGGGTCGGG CTTCGACATC 
GTCTCGGTCG GCGAGCTGGA ACGGGTATTG GCGGCAGGTG GCGACCCTTC CAGAGTGGTG 
TTCTCCGGCG TCGGCAAGCG CGAGGACGAG TTGGCGCGTG CTCTGGATAC CGGCATCCGC 
TGCTTCAATG TCGAGGTGGC CGAAGAGCTC GACCGGCTCG ACCGGCTGGC CGGCGAGCGC 
GGCGTCAAGG CGCCGGTGTC GCTGCGGGTG AATCCGGACG TCGACGCCGG CACCCACCCT 
TACATCTCGA CCGGCCTGAG CGAGAACAAG TTCGGCATCG AAGTGGAAGA GGCGCTCGTG 
CAGTACCGCC GTGCGGCGCG GATGCCCAAC CTGGAAGTCG TCGGCATCGA TTGCCACATC 
GGTTCGCAGC TGACCAGTTC CATGCCGTTC ATCGACGCGC TGGACCGGGT GCTGGCGTTG 
GTCGCTCGGC TGCGCGGCGA AGGCATCGCG ATACGCCACC TGGACCTGGG CGGCGGCCTG 
GGTATCCGTT ACCGCGACGA GGATCCGCCG CATCCGACGG AATACGCCGA GCAGCTTTTC 
CGCCGGCTCG GCCGCCACGA TTTCGAAATC CTGATCGAGC CGGGCCGTGC GGTCGCCGGT 
AACGCCGGTA TCTTGCTGAC CCGGCTGGAA TATCTCAAAG CCAATCAGAC CAAGCATTTC 
GCGATCGTCG ACGCGGCGAT GAACGATCTG CTGCGCCCGG CGCTGTACGG TGCCTGGCAG 
GAGATCGTCC CGGTCGCACC ACGTAACGAT GTGGAGTCGC ACAGCTACGA TGTCGTGGGA 
CCGGTCTGCG AGACCGGCGA TTTCCTGGGC AAGTCGCGCG AGCTGAGACT GGTCCCGGGC 
GACCTGCTGG CGGTGCGCTC TGCCGGAGCC TACGGTTTCA GCATGAGTTC GAATTACAAC 
TCCCGGCCAC GGCCGGCCGA AATCCTGGTG GATGGCAGCG CCGTGTACCT GATCCGGGAG 
CGGGAGAACG TGGCTCGACT TTTCGCCGGT GAGCGGCTGC TGCCGTAG 

 

Protein sequence

MDHFNYRDGI LHVEDVPLSA IAEQHGTPCY VYSRATLERH WHAFDAALGD CPHLVCYAVK 
ANSNIAILNL LARLGSGFDI VSVGELERVL AAGGDPSRVV FSGVGKREDE LARALDTGIR 
CFNVEVAEEL DRLDRLAGER GVKAPVSLRV NPDVDAGTHP YISTGLSENK FGIEVEEALV 
QYRRAARMPN LEVVGIDCHI GSQLTSSMPF IDALDRVLAL VARLRGEGIA IRHLDLGGGL 
GIRYRDEDPP HPTEYAEQLF RRLGRHDFEI LIEPGRAVAG NAGILLTRLE YLKANQTKHF 
AIVDAAMNDL LRPALYGAWQ EIVPVAPRND VESHSYDVVG PVCETGDFLG KSRELRLVPG 
DLLAVRSAGA YGFSMSSNYN SRPRPAEILV DGSAVYLIRE RENVARLFAG ERLLP