Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA0741 |
Symbol | rpoN |
ID | 3103530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | - |
Start bp | 780492 |
End bp | 781955 |
Gene Length | 1464 bp |
Protein Length | 487 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637169945 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_113244 |
Protein GI | 53805053 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.111429 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAT CACTGCAACT TCGGCTGGGG CAGCAACTGG CCATGACCCC CCAGCTGCAG CAGGCCATCA AGCTGCTGCA GATGTCCACG CTCGAATTGC AACAGGAAAT CCAGCAGGCC CTGGATTCCA ACATGATGCT GGAAATCACC GACGAGGAAG AGCCCGTCCT GAACGCTGTG ACCGAGGAGC CGCCGCTTGC CGCTGCCGAA CCCGCCTACG CCGAGCTCCC CGATCTCGAC ACCCAGACCA CCATCCCCGA CGAACTGCCG GTCGACTCCT CCTGGGAGGA CGTTTTCGAC GGCATGCACA ATTACACGCC CAGCAACGCG GCAGAGCCGG AGAACGAAGA TTTCCTGGGG CAGCGGGGCA AGGGACAAAG TCTCCAGGAT TACCTGCTCT GGCAGATGGA GCTCACCCCC TTCACCGAGC GCGACCATGC GATCGCAACC GCCATCATCG ATGCGGTGGA CGATGACGGC TATCTGGATG CCACCGTGGA AGAGATCACC CAGGGGCTGA GCTCGCAACT CGAAAACCTC GAACAGGACG AAGTCCGGGC GGTTCTGCAC CGCATCCAAA ACTTCGATCC ACCCGGCATC GCTGCGGAAA ACCCGGCCGA CTGCCTGCGC ATCCAACTGC AGCAGATGCC CGAGAACACC CCCTACCGCG CCCAGGCCCT CGAGCTGGTC CGCCATCACG TCGACCTGCT CGCGAAGAAG GATCTCGTCA GGCTCAAGAA AGCGCTGGAG CTCGACGACG ATGAGCTGGC CGAAGTGATC CGTCTGGTCC GGTCCCTCGA CCCGAAACCG GGCCGCGCGG TGGAACCGGA CGACTACCAG TACATCATCC CGGACGTCTT CGTCTATCGG CAGGGAACCG AATGGGCCGT CGCCCTCAAC CCTGAAATCG CTCCCAGACT GCGCGTCAAC CCCTATTACA GCGGCCTGAT TCGGCGAGCG GACAGCAGCT CCGACAACGT GACCATGCGC AATCATCTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAAACCCTG CTCAAAGTGG CGCGCGCCAT CGTAGACCGC CAGCGCGAGT TTCTCGAGAT TGGTGAAACC GCGATGAAAC CCCTGGTGCT GCGTGACATT GCCGAAGAAG TCTCCATGCA CGAATCGACG ATTTCGCGGG TAACGACCCA GAAATACATG CACACGCCCA ATGGCATCTA CGAATTCAAG TATTTCTTTT CGAGCCACGT GTCCACGGAT TCCGGCGGCG AATGCTCGGC CACTGCAATC AAGGCGTTCC TCAAGGAAAT CGTGAGCAAG GAAGACGCGA CCCGTCCCTT GAGCGACCAT GCCATCGCCG GCATGCTGAA AGACAAGGGC ATCAACGTTG CGCGGCGAAC CATCGCCAAA TACCGTGAAG CGATGGGCAT TCCACCGTCC AACGAAAGAA AGCAGTTGTT CTAA
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Protein sequence | MKQSLQLRLG QQLAMTPQLQ QAIKLLQMST LELQQEIQQA LDSNMMLEIT DEEEPVLNAV TEEPPLAAAE PAYAELPDLD TQTTIPDELP VDSSWEDVFD GMHNYTPSNA AEPENEDFLG QRGKGQSLQD YLLWQMELTP FTERDHAIAT AIIDAVDDDG YLDATVEEIT QGLSSQLENL EQDEVRAVLH RIQNFDPPGI AAENPADCLR IQLQQMPENT PYRAQALELV RHHVDLLAKK DLVRLKKALE LDDDELAEVI RLVRSLDPKP GRAVEPDDYQ YIIPDVFVYR QGTEWAVALN PEIAPRLRVN PYYSGLIRRA DSSSDNVTMR NHLQEARWFI KSLQSRNETL LKVARAIVDR QREFLEIGET AMKPLVLRDI AEEVSMHEST ISRVTTQKYM HTPNGIYEFK YFFSSHVSTD SGGECSATAI KAFLKEIVSK EDATRPLSDH AIAGMLKDKG INVARRTIAK YREAMGIPPS NERKQLF
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