| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0547 |
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| Symbol | |
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| ID | 3102783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 564816 |
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| End bp | 568460 |
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| Gene Length | 3645 bp |
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| Protein Length | 1214 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637169762 |
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| Product | sensory box protein |
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| Protein accession | YP_113066 |
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| Protein GI | 53805211 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.428302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGGTA TCGCTCATGG CGCCGACGAA TGGCTGGACC TGTTCGCCGC CTCGCTGGGG
GATCATCCGG TCTTCGCCTG GGCGCGGTTG GCGGTTTTGA CGATTTCCTT CCTCTGCCTG
TTCCATTTCG GCGTCCAGGG GCTGGTCAGC CAGGGTGTCC GGCTGCCCGT GCGGCGGGTT
TATCTGGCCC AGGCGCTCGT GTTCGTAGGG GTGGGGCTGC TGTCCCCGAG TGCAGGCGGC
GGCTCGAGCG GCGTGTTGTA TGACGCCCTG GGGCTCCCCG GCGCGCTGGC GGCGGTCGGG
GCGTTCGTTC GGGCGGCGCG GACCGCGCGA GGACGGTACG ACGTCGCCCT CGTCGCGGCG
GCCCTGGCGA TGGCCGTCTT CGCCGTGAGC CTGGGGGTTG CCGGGTCGGG CACGTCCCGT
TTTCCTCCGG CCACCCTGAC CGCGCCGCTG CTGCGCGCTC TCTGTGCGTT GGCCATGGGG
GCGGGAATCT GGCTTCATTA CCGGCGCTCG GGCGAGCTTC CGGTCCCCGC GGAGGAACTC
AGTTCCGGTC TGGGATTCGG TGTCAGGCTG GTCCTGGTCG CGTCGGTCGT GCTGGGGGCT
GCATTCGTAT TGACCGAGCT TTTCGGGCAT GCGGCCGACC GGAGCGTCCG CCGCGAGTTG
TCGATCCAGG CCGAAACCGT GGCGGCGTCG ATCAACCCGG AGTGGATTCG TCAGGTCCGT
ACGGGGGCCA CGGAGGTTCG GGAACGGGAG GAGCATTGGC TCATCAGCCA GCTCCTGCGC
ATCGATGCCG CGGACCCCAA ACTCAAGGGC CTTTACCTCC TGATTCCGGC GGAAGGGGGG
GCGATGCGCG CCATCGGCTC CAGCGCGGGC GACATCGAGC CACCCCGGAA TGGCGTCGAA
GGGCGGGGGT GGCCGAACAC GGAGCATGCG GAAGCCGTGG CCGGCGTGTT TACCAGCGGC
CGGTCACGGG TGCTCGGTCT GGCCCATGGG GATGGCAAGG ACACGGTTTC CGCTTTCGCG
CCGGTGCGGG ACACGGAGAC CGGGGAGATT TTCGCCGCTC TGGGCCTGGA GATCGACGCG
GCGGTGAGGC GGGACCGGGT CGCGGCTTAC CGCGTGGTCG CCATCGCCAT CGCCCTGCTG
ATCGCCATGG GCACGCTCGG CTTCGAGGTG AGCCGTCAGC GCCTGTGGCT GTCTTCACGG
ATCGCCAAGG CCGAGCGGCG CCGGCTGGCG GAGGCTCAGC GTCTCGCCCG CGTGGGGAGC
TGGGTCTATG ACCCGGCGAC GGACCGCATG ACTTGGTCGG AGGAAACCTA CCGGATTTTC
GGGCTTCCCT TCGACGGTGA GGTTCCCCAT CGGTATCAGG AGTTCGCCGC CCTGTTTGTC
CCGGAAGACC GTGAGCTCAT CGAGGCCGCG CTGCGGGGCG GACGCGACGA TCTGCTCGGG
GTGGAACGGC CGCTGTGTGT GAGGCGGGCG GATGGCGCGG TGCGGCAGGT GAACTTCAAG
GTCGAACTCC AGGGACGGCG GGGAGATTCG GGGCCGGTGC TGCAGGGTAC CCTGCAGGAC
GTCACCGAAC GCTGGGAAGC CGAACGGGCG CTGCGGCAAT CCGAGGAGAG GCTGCGCCTG
CACGTCGAAC ACCTGCCGCT GGCGGTGATC GAGTGGGACC TGGATTTCAT CGTCAGCCGC
TGGAATCCGG CGGCGGAAAG AATCTTCGGC TACGGTGCGG ACCGGATGAT CGGCCGTTCC
GCCGGCATAC TGTTTCCGGA GGACGTACTG GAGCAGGCGG AAGCGATCTG GCGGGAGGTA
TCGGGAGGGT CCGGAAACCG TGTCGTCACC GCCAATGTGA CGGCGGACGG CCGCACGATA
CGTTGCGAAT GGTACAACAC CCCGCTGACG ACGCCGGATG GCACGGTGAT CGGCGTGGCC
TCGCTGGTGG ACGACATCAC CCGGCGCGAG GCGGTCGAGG CCGAGCTGCG GCTGGCGGCG
ACGACCTTCG AGACCGACGA AGCCATTCTG ATCGCCGGTG CCGACGGCAG GATTCTGAGG
GTCAACGCGG CGTTCAGCCG GATCACGGGC TACCGGCAGG AGGACGTGGT CGGCCGGAAT
CCCCGGCTGT TCAAGTCGGG CCTGCATGGC GCGGAGTTCT ACCGGGAGGT CTGGCGCAGC
CTCGAACAGA CGGGGCGCTG GCAGGGCGAG ATCTGGAACC GGCGGAAGAA CGGCGAGGTC
TATCCCGAGC GCAAGACCAT CACCGCGGTT CGGTCGGCCA ACGGGGACAT CACGCACTAC
GTCGCGATCT CCTCGGACAT TTCCGAACTC AAGCGCACGG AAGAAAAGAT CCGCCAGCTC
GCCTATTACG ATTCCCTGAC CGGCCTGCCG AACCGGAGTC TGATCTTCGA GCGGCTCACG
CAGCAGATGA AAGCGGCGCG GCGCGAGGGA ACCTACGGCG CGCTGCTGTT CATGGACCTG
GATTATTTCA AGACCCTGAA CGACTCCCTG GGCCACCACA TGGGCGACCG CCTGCTGGTC
CAGGTGGCCG AGCGCCTGAA AAACTGCCTG GAGGACGAGG AAGCGGCGGC CCGCCTCGGG
GGGGACGAAT TCGTCGTCCT GCTCGCGCCG GCCAAGCCCA GCGCCTCGGT TGCGGCGGGC
CAGGCGATCG TCCATGCGCG GCGGGTGCGC GAGCTGCTCT CGGCGCCGTT TCAGCTCGAC
GATTACGTGC ACTACATCTC CGTGAGCATC GGCATCGCGC TGTTTCCCGA CGGCGCGAAC
ACCGCCGAGG ATGTGCTCAA ACAGGCGGAC ACGGCCATGT ACGTGGCCAA GAACGAGGGG
CGCGACGGCG TCCGTTTCTA CGAGAGCGCG ATGGAGGCCG TCGTCCGCGG CCGGCTGGAG
CTGGAAAAGG CCTTGCGGAA GGCGCTGGCC AACGACGAGT TCGAGGTCTA CTACCAGCCG
CAGATGCTCG GTGACGGGCG GGTGGTGGGT GCCGAAGCCC TGATCCGCTG GTTCCATCCC
GAACGCGGTG CGATCTCCCC CGATCAGTTC ATACCGGTCT GCGAGCAGAA CGGCATGATA
CTGCGGGTGG GGGCTATCGT GCTGAGGCGG GCCTGCGCCT GTCTGGCCGA GATTCGGGCG
CGGGGCTTGG CCCTGCCGAA GCTTTCCGTG AACGTCAGCC CGCGCCAGTT CATGCGCAGC
GACCTGATGA CCCAGTTGGA GCAGTTCTGC CTGGAGAACG GCGTTTCGCC GACGGACCTT
TGCCTCGAAC TGACGGAAGG TGTGCTGCTG AACCATACCG AGCTCGCCGT CGCGCAGATC
GGGCGCCTGA AGAACCTCGG CGTGAGTTTT TCCATCGACG ATTTCGGAAC GGGCTATTCC
TCCCTGGCCT ATCTGAAACA TCTGCCGCTG GACGACCTCA AGATCGCCTC GGCGTTCGTC
CGCGATCTGG AGCAGGACAG CAGTGACGCG GCCATCGTCG AGACCATCGT CAGCATGGCG
CGCCATCTGG GACTCGACGT CATTGCCGAA GGCGTGGAAA CCCGGACCCA GGTCGAGATC
CTGGAGCGTT ACGGCTGCCA CCGGTTCCAG GGCAACTACT TCGCCCGGCC GCTGCCCAAG
GACGACTTCA TCCGCTTCGT CGCCGAACGT CAGCGCCGCG CCTGA
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| Protein sequence | MFGIAHGADE WLDLFAASLG DHPVFAWARL AVLTISFLCL FHFGVQGLVS QGVRLPVRRV
YLAQALVFVG VGLLSPSAGG GSSGVLYDAL GLPGALAAVG AFVRAARTAR GRYDVALVAA
ALAMAVFAVS LGVAGSGTSR FPPATLTAPL LRALCALAMG AGIWLHYRRS GELPVPAEEL
SSGLGFGVRL VLVASVVLGA AFVLTELFGH AADRSVRREL SIQAETVAAS INPEWIRQVR
TGATEVRERE EHWLISQLLR IDAADPKLKG LYLLIPAEGG AMRAIGSSAG DIEPPRNGVE
GRGWPNTEHA EAVAGVFTSG RSRVLGLAHG DGKDTVSAFA PVRDTETGEI FAALGLEIDA
AVRRDRVAAY RVVAIAIALL IAMGTLGFEV SRQRLWLSSR IAKAERRRLA EAQRLARVGS
WVYDPATDRM TWSEETYRIF GLPFDGEVPH RYQEFAALFV PEDRELIEAA LRGGRDDLLG
VERPLCVRRA DGAVRQVNFK VELQGRRGDS GPVLQGTLQD VTERWEAERA LRQSEERLRL
HVEHLPLAVI EWDLDFIVSR WNPAAERIFG YGADRMIGRS AGILFPEDVL EQAEAIWREV
SGGSGNRVVT ANVTADGRTI RCEWYNTPLT TPDGTVIGVA SLVDDITRRE AVEAELRLAA
TTFETDEAIL IAGADGRILR VNAAFSRITG YRQEDVVGRN PRLFKSGLHG AEFYREVWRS
LEQTGRWQGE IWNRRKNGEV YPERKTITAV RSANGDITHY VAISSDISEL KRTEEKIRQL
AYYDSLTGLP NRSLIFERLT QQMKAARREG TYGALLFMDL DYFKTLNDSL GHHMGDRLLV
QVAERLKNCL EDEEAAARLG GDEFVVLLAP AKPSASVAAG QAIVHARRVR ELLSAPFQLD
DYVHYISVSI GIALFPDGAN TAEDVLKQAD TAMYVAKNEG RDGVRFYESA MEAVVRGRLE
LEKALRKALA NDEFEVYYQP QMLGDGRVVG AEALIRWFHP ERGAISPDQF IPVCEQNGMI
LRVGAIVLRR ACACLAEIRA RGLALPKLSV NVSPRQFMRS DLMTQLEQFC LENGVSPTDL
CLELTEGVLL NHTELAVAQI GRLKNLGVSF SIDDFGTGYS SLAYLKHLPL DDLKIASAFV
RDLEQDSSDA AIVETIVSMA RHLGLDVIAE GVETRTQVEI LERYGCHRFQ GNYFARPLPK
DDFIRFVAER QRRA
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