Gene MCA0393 details

Gene Information

• Locus tag: MCA0393
• Symbol: rimM
• ID: 3102757
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 398203
• End bp: 398721
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637169613
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_112924
• Protein GI: 53802419
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGGGGA ATTCCGGCAA TGATCGGTCC GTCGTGGTGG GCCGGGTTTC CGGCGCCTTC 
GGTGTGAGGG GCTGGGTCAA GGCCGTTTCC TTCACCGATC CTCCCGTCAA TCTGGTCGGT 
TACCGACCTT GGACGTTGCG GCGGGGTGAT GCCGAGCGCA GGGCCGACGT TTTGGAAGGC 
CGCGAGCACG GCAACGCAGT GATCGTGCGG CTGCAGGGCG TCGATACCCG TGAACAGGCC 
GAGGCGCTGA AAGGCTTCGA AGTGACGGTT CGCCGGAGCC AACTGCCGCC ACCAGCGCCG 
GGAGAGTATT ACCGTGTCGA CCTGGTCGGC TTGAAGGTAG TCAACCTGGG AGAGACGGTC 
TTGGGCGAGG TCGTCGACGT GATGGAAACC GGTGCCAACG ATGTGCTGGT GGTGCAGGGC 
GACCGCGAAC GGCTTTTGCC GTTCGTACAG GGCGTATTCG TCAAATCCGT GAATCTGGAG 
GAGTCGCGGA TAGTGGTCGA CTGGGACCCA GGGTTCTGA 

 

Protein sequence

MPGNSGNDRS VVVGRVSGAF GVRGWVKAVS FTDPPVNLVG YRPWTLRRGD AERRADVLEG 
REHGNAVIVR LQGVDTREQA EALKGFEVTV RRSQLPPPAP GEYYRVDLVG LKVVNLGETV 
LGEVVDVMET GANDVLVVQG DRERLLPFVQ GVFVKSVNLE ESRIVVDWDP GF