Gene MCA0056 details

Gene Information

• Locus tag: MCA0056
• Symbol: rho
• ID: 3104250
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 57326
• End bp: 58582
• Gene Length: 1257 bp
• Protein Length: 418 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637169282
• Product: transcription termination factor Rho
• Protein accession: YP_112596
• Protein GI: 53802749
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.624347
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCTCA CTGACCTCAA GCGCAAGCCC GTATCCGAAC TGATCGAAAT CGCCGAATCC 
CTGGACATCG AAGGCGTCGC CCGAACCCGC AAGCAGGATC TGATCTTTTC GATCCTGAAG 
AAACTGGCAA AAAGCGGCGA AGACATCTAT GGCGACGGGG TGCTGGAAAT CTTGCAGGAT 
GGCTTCGGAT TCCTGCGCTC GCCGGACAGC TCCTTCCTCG CCGGACCCGA TGACATCTAT 
GTGTCGCCGA GCCAGATCCG GCGCTTCAGC CTGCGCACCG GCGACACCAT TTCCGGCAAG 
ATACGGCCGC CCAAGGACAG CGAGCGTTAT TTCGCCATGC TCAAGGTCGA GCAGATCAAT 
TACGAACCTC CGGAAAACGC CAAGCACAAG ATCCTGTTCT CGAACCTGAC GCCGCTGTTC 
CCGGTCCAGC GTTTCGTGCT GGAACTGGGC AACGGTACCA CGGAAGACCT GACCGCCCGG 
GTGATCGACC TGGTCGCCCC CATCGGCAAG GGTCAGCGCG GCCTGATCGT ATCGCCGCCG 
AAAGCCGGCA AGACGATGAT GCTGCAGAAC GTCGCCCATT CCATCGCAGA GAAGAATCCC 
GAGTGCTATC TGATCGTGCT GCTCATCGAC GAACGGCCGG AGGAAGTCAC CGAGATGCAG 
CGCAGCGTCA AGGGCGAGGT CGTCTCCAGC ACCTTCGACG AGCCGCCCGC ACGGCATGTC 
CAGGTCGCCG AAATGGTCAT CGAAAAGGCC AAGCGTCTGG TCGAACACAA ACGGGACGTG 
GTCATCCTGC TGGATTCCAT CACCCGCCTG GCACGCGCCT ACAACACGGT GGTGCCGTCC 
TCGGGCAAGG TGCTGACCGG CGGCGTCGAC GCCAATGCCC TGGAACGTCC CAAGCGCTTC 
TTCGGCGCGG CCCGCAACAT CGAAGAAGGC GGCAGCCTGA CCATCATCGC CACCGCCCTC 
ATCGACACCG GCTCGCGCAT GGATGAAGTG ATCTACGAAG AGTTCAAGGG CACCGGCAAC 
ATGGAACTGC ATCTCGAACG CAAGATCGCG GAACGGCGCA TCTACCCCGC CATCAACATC 
AACCGTTCGG GCACCCGTCG CGAAGAATAC CTCGTCGATC CGGACGAACT GCAGAAAAGC 
TGGATTCTGC GGAAGATATT GCAGCCCATG GACGAAATGG CGGCCAACGA GTTCCTGCTG 
GGCAAGCTCA AGGACTCGAA GACCAACCGT GAGTTCTTCG ACATGATGAA ACGCTAA 

 

Protein sequence

MNLTDLKRKP VSELIEIAES LDIEGVARTR KQDLIFSILK KLAKSGEDIY GDGVLEILQD 
GFGFLRSPDS SFLAGPDDIY VSPSQIRRFS LRTGDTISGK IRPPKDSERY FAMLKVEQIN 
YEPPENAKHK ILFSNLTPLF PVQRFVLELG NGTTEDLTAR VIDLVAPIGK GQRGLIVSPP 
KAGKTMMLQN VAHSIAEKNP ECYLIVLLID ERPEEVTEMQ RSVKGEVVSS TFDEPPARHV 
QVAEMVIEKA KRLVEHKRDV VILLDSITRL ARAYNTVVPS SGKVLTGGVD ANALERPKRF 
FGAARNIEEG GSLTIIATAL IDTGSRMDEV IYEEFKGTGN MELHLERKIA ERRIYPAINI 
NRSGTRREEY LVDPDELQKS WILRKILQPM DEMAANEFLL GKLKDSKTNR EFFDMMKR