| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP2340 |
|---|
| Symbol | |
|---|
| ID | 3242102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 2385517 |
|---|
| End bp | 2386935 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637169020 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_189889 |
|---|
| Protein GI | 57865685 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACA TTTCGATGAC GACTTCTAAA CGTAATGCTA TCGTTACGGT AATGCTCATT
AGTGCTTTTG TGTCTATGCT CAATCAAACT ATTTTAAACA CTGCACTACC AGCAATCATC
AAAGGACTGA ACATCACAGA AACAACAGCA CAATGGTTAA TTACCGGATT TATGCTTGTT
AACGGTATAA TGATTCCACT CACTGCCTTT TTAATGGATA AATATTCGAC ACGCCATTTA
TATATTTTCT CAATGGCTAT TTTTCTTATA GGATCTATTG TAGCGGCATT TTCACCTACG
TTTACAATTT TAATGATATC TCGTATTATC CAAGCGATTG GTGCCGGCAT CCTTTTACCA
TTGATGCAGT TTACAGTATT TACACTGTTT CCTGCTGAAC AACGTGGGTT TGCGATGGGA
TTGGCAGGGG TGGTTGTACA AAGTGCGCCT GCAATTGGAC CAACGTTAAC TGGATTATTC
GTAGATTTAT TTAGTTGGAG AATGCCTTTT TATCTTGTTT CAGCAATTGC TGCGGTAGCT
TTTATTTTAG GTTTCTTCTT CGTAGAAAAT AATACAAAAA CAAAAGACAT TGTTCTTGAT
AAAATTTCTG TAGTTTATTC TACTTTCGGC TTTGGTTTAA TATTATTCGC ATTTAGTAGC
GTGAGTACGT TTGGTATCAC CTCTCTACCT GTCATTGTGA CATTTGTACT CGGTATAGCC
ATTATCATAA TTTTTACAAC GCGTCAGCTT AAATTAAAAC ATCCATTGTT AAATATGCGT
GTGTTTAAAA ATAAAGTGTT CACACTTTCA GCTGTTTCTT CAATGCTTGT ATATATTACG
ATGGTAAGTC CTGCGTTACT CATACCTATC TACATTCAAA CAGGTTTAGG TCAATCAGCA
TTACTATCAG GTGTTGTTGT ACTTCCAGGC GCGGTCATTA ATGGATTAAC GATGGTTTAT
ACAGGGAAAA TTTTTGATAA GCATGGTATT AAAGTGCTTG TGATACCTGG TTTTATCTTA
CTCATTAGTA TGACATTCTT ATATTCATTC CTTACTACAG GAACGCCATA TTGGTTTGTT
ATTCTTGTTT ACACTATAAG AATGATTGCG TTAGGATTAT TAGTTATGCC TCTTAATACA
GTTGGACTGA ATGCACTTGA GTCAGATGAT GTCTCACATG GTACAGCAAT TATGAATTCC
TTACGCATCA TTGCAGGTGC TATGGGTACA GCGGTTAGTG TGACGATTCT ATCAATAGTG
GCAAAACAGT ATACAGCTTC ACACTCGACA ATGTCAAAAA TGAAACTAAC ACAAGAAGCA
ACTGTACATG GTATAGATGT TGCATTTATT TTTACTACAG TATTAATCAT TATTGGATTT
ATTTTAGCGT TATTCATAAA AGAAGAAAAA AATCATTAA
|
|---|
| Protein sequence | MSNISMTTSK RNAIVTVMLI SAFVSMLNQT ILNTALPAII KGLNITETTA QWLITGFMLV
NGIMIPLTAF LMDKYSTRHL YIFSMAIFLI GSIVAAFSPT FTILMISRII QAIGAGILLP
LMQFTVFTLF PAEQRGFAMG LAGVVVQSAP AIGPTLTGLF VDLFSWRMPF YLVSAIAAVA
FILGFFFVEN NTKTKDIVLD KISVVYSTFG FGLILFAFSS VSTFGITSLP VIVTFVLGIA
IIIIFTTRQL KLKHPLLNMR VFKNKVFTLS AVSSMLVYIT MVSPALLIPI YIQTGLGQSA
LLSGVVVLPG AVINGLTMVY TGKIFDKHGI KVLVIPGFIL LISMTFLYSF LTTGTPYWFV
ILVYTIRMIA LGLLVMPLNT VGLNALESDD VSHGTAIMNS LRIIAGAMGT AVSVTILSIV
AKQYTASHST MSKMKLTQEA TVHGIDVAFI FTTVLIIIGF ILALFIKEEK NH
|
|---|
| |