Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SERP1346 |
Symbol | tnpB-2 |
ID | 3241440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus epidermidis RP62A |
Kingdom | Bacteria |
Replicon accession | NC_002976 |
Strand | - |
Start bp | 1401863 |
End bp | 1403755 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 637167995 |
Product | Tn554, transposase B |
Protein accession | YP_188918 |
Protein GI | 57867259 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCTT CTAGTAAAAG GAAAATTATT AGTCAGAGTG AGATTAGCAA AAAAATAGCT GTAATGAATG AAGAAATGCA GGGGTTTTGG GCTAATAATA GTTGGGATAT AAGAAAATGT CCACATCCTT CTGCCATAGA ATTAAGTAAG AATCCTGCTT TAAGGAATCG TTGGGTTCGT TTTGAACGTG TTAAAAATCT GTGGTTAAGA ACAGAATTGA AATATTTTTA TTTTTACCAT TTAAACAATG GAATATGGAA TGCAAAAACT GTCTGGATTA GAAAAGGAAC AGTAATTAAT AAAATGTTAG ATTTCTTAGA TTTAAAGTAT CCTAGCATTA CTTCAATTAC TGAAGTTCCT ATTGAAAAAG CAATGACGGA GTATAGAACT TATTTGACAA AACGGGGTGT TAGAATTACC ACTACTAATT ATAAGATTAC TGCTAATCAA GAAAAAACAC CTGTAAAAGC TAATTCCTAC TATGTTACTA ATCTAAAACA ATTTATGGAG TTTTATGAGA ACTTTTATTT TGATGGAGAG GAGTGGGATA AAGACGTTTG GGATAGACGT AACTTACCTT TGCCAGATGA TAAGGTTAAC CCAACACAAT ATGAATATAC AATTAACTTT AAAGGGTTTC GGAATACATA TTTTAAACAA CTTGTAAAAA GATATTGTAA GTTGAGATTG AACGTGGATA GCTTTTCCTA TGTAAGTGAT ATTGCCCAAA GACTTAAAGA GTTCTTTAAT TTTCTGGACA TGAAATTTAA ACAAGTTCAG AGAGTACACC AATTAACGAG AGTGGAAATT GAAGCATATT TAAGTGAACT AAACATGATG GGAATAAAAC CTAGTACAAT AACTGGGAGG ATCTCTATAT TGGAAGGACT ATTTAGTACC CTTCTTAGGC TAGAATGGGA TGATGTTCCT TCCAAAATAT TAATTTATTC TGAGGACTAT CCGAAAATAC CAAGAGCAAA ACCACGCTTT ATAGATGAAT TCGTCCTAGA GCAATTGAAC AGTCATCTTG ATAAATTACC CGAATATATA GCTACGATGA CTATGATTGT TCAAGAATGT GGAATGAGGA TAAGTGAATT GTGCACCTTG AAAAAAGGCT GTCTATTAGA GGACAAAGAT GGAGATTTCT TTTTAAAGTA TTATCAATGG AAAATGAAAA AGGAGCATAT AGTTCCAATA TCTAAAGAGG TAGCTTTACT TATTAAAGTT CGGGAAGATA AAGTTTCAGA GGAATTTCCA GATAGTGAAT ACCTCTTTCC AAGAAAAGAT GGATCGCCAT TAAAACAAGA AACATTTAGA GGTGAGTTAA ATAAATTAGC TTATGAGCAA AATATAGTGG ATAAATCAGG TGAGATTTAT AGATTCCATG CCCATGCCTT TCGCCATACA GTAGGAACAA GAATGATTAA CAACGGGATG CCCCAGCATA TTGTGCAGAA ATTTTTGGGG CATGAAAGCC CAGAAATGAC AAGCAGATAC GCTCATATCT TTGATGAAAC TCTAAAAAAT GAATTTACTA AATTTCAGGA AAAACTGGTT ACCAATAATG GAGATGTGCT TGATCTAGAT GAAGATAATG AAGTCGATGA TGTAGAGCTT CAATGGTTCA AGAAAAATAT AAATGCACAA GTGCTTCCAA ATGGTTATTG TAGATTGCCA GTAGTAGCAG GTGGTTGTCC ACATGCGAAT GCATGCTTAG ATTGCACTCA CTTCTGTACC AGTAAGCAAT TCTTACCACA GCACGAAGAA CAGTTAGAGC GTACAGAAGA GTTATTAGCC ATAGCTAAGG ATAAACAATG GCAAAGACAA GTAGAGACTA ATAGCCGTGT TAAAGAGCGT TTAGAACAAA TCATTGGAAG TTTGACGGGG TAA
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Protein sequence | MNASSKRKII SQSEISKKIA VMNEEMQGFW ANNSWDIRKC PHPSAIELSK NPALRNRWVR FERVKNLWLR TELKYFYFYH LNNGIWNAKT VWIRKGTVIN KMLDFLDLKY PSITSITEVP IEKAMTEYRT YLTKRGVRIT TTNYKITANQ EKTPVKANSY YVTNLKQFME FYENFYFDGE EWDKDVWDRR NLPLPDDKVN PTQYEYTINF KGFRNTYFKQ LVKRYCKLRL NVDSFSYVSD IAQRLKEFFN FLDMKFKQVQ RVHQLTRVEI EAYLSELNMM GIKPSTITGR ISILEGLFST LLRLEWDDVP SKILIYSEDY PKIPRAKPRF IDEFVLEQLN SHLDKLPEYI ATMTMIVQEC GMRISELCTL KKGCLLEDKD GDFFLKYYQW KMKKEHIVPI SKEVALLIKV REDKVSEEFP DSEYLFPRKD GSPLKQETFR GELNKLAYEQ NIVDKSGEIY RFHAHAFRHT VGTRMINNGM PQHIVQKFLG HESPEMTSRY AHIFDETLKN EFTKFQEKLV TNNGDVLDLD EDNEVDDVEL QWFKKNINAQ VLPNGYCRLP VVAGGCPHAN ACLDCTHFCT SKQFLPQHEE QLERTEELLA IAKDKQWQRQ VETNSRVKER LEQIIGSLTG
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