| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0897 |
|---|
| Symbol | hom |
|---|
| ID | 3240409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 907781 |
|---|
| End bp | 909061 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637167553 |
|---|
| Product | homoserine dehydrogenase |
|---|
| Protein accession | YP_188476 |
|---|
| Protein GI | 57866811 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000316275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGT TAAATATCGC ATTACTTGGT TTGGGAACTG TCGGATCAGG TGTTGTAAAG
ATTATTGAAG AGAATAGACA ACAGATTAAA GACACCATCA ATAAGGATAT TGTCATTAAA
CATATTCTAG TCCGAGATAA ATCTAAGAAA CGTCCGTTAA ATATTAGTCA ATATCATCTT
ACAGAAGATA TTAATGACAT CTTAAATGAC AATTCTATTG ATATAGTCGT TGAAGTTATG
GGTGGTATTG AACCTACTGT TGATTGGTTA AGAACAGCCC TTAAAAATAA AAAACATGTG
ATTACAGCAA ATAAGGACTT ACTAGCTGTC CATTTAAAAT TGTTAGAGGA CTTAGCTGAA
GAAAATGGCG TCGCTCTTAA ATTTGAAGCA AGTGTGGCAG GTGGTATCCC CATTGTCAAT
GCCATTAATA ATGGACTGAA TGCAAATAAT ATTTCTAAAT TTATGGGAAT ATTTAATGGA
ACTTCTAACT TTATTCTCTC AAAAATGACT CATGAACAAA CAACTTTTAA AGATGCGTTA
GAAGAAGCAC AAAGATTAGG ATTTGCTGAA GCTGATCCAA CAGATGATGT AGAAGGTGTA
GATGCTGCAA GAAAGGTAGT TATTACATCT TATTTATCTT TTAACCAAGT CATTAAACTG
AATGATGTTA AATTGGTAGG AATTAGTGAC ATTACATTAG CAGACATTAA TGCAGCAAGC
GCATTAAATT ATAAAATTAA ATTAATAGGT AAAGGTACAT ATGAAAATGG ATATGTGAAT
GCTTCAGTAG AACCGACACT GATACATAAG AATCACCAAC TTGCAGCTGT AGAGAACGAA
TACAATGCAA TATATGTTAT AGGTGATGCT GTTGGCGATA CAATGTTTTA TGGTAAAGGT
GCAGGTAGTT TAGCAACAGG AAGTGCAGTT GTAAGTGATT TATTAAATGT GGCACTTTTC
TTTGAATCAA ACTTACACAC TTTACCACCT CATTTTGAAT TAAAGACAGA GGAAACTAAA
GAAATGATGG ATGGTGCAGA ACCAGTGGTT ATTCAAGAGA AATCTAATTA CTATATAGTA
ATTAGTAACA ATAATAAATC TTTGGAGAAA GTTGAATATG ACATTAAAAA GAAATTACCA
TTCCATAAAT CGTTGCAACT TGTTGAGAGG GATCAAGATA CTTATGCAAT TATCGTTACT
GGAATAGAAA CATCTCCAGA AAAAGTTCTA AATCAATCAG GATTTAATAT CAAGAAAGTT
TATCCTGTAG AGGGAGTTTA A
|
|---|
| Protein sequence | MKELNIALLG LGTVGSGVVK IIEENRQQIK DTINKDIVIK HILVRDKSKK RPLNISQYHL
TEDINDILND NSIDIVVEVM GGIEPTVDWL RTALKNKKHV ITANKDLLAV HLKLLEDLAE
ENGVALKFEA SVAGGIPIVN AINNGLNANN ISKFMGIFNG TSNFILSKMT HEQTTFKDAL
EEAQRLGFAE ADPTDDVEGV DAARKVVITS YLSFNQVIKL NDVKLVGISD ITLADINAAS
ALNYKIKLIG KGTYENGYVN ASVEPTLIHK NHQLAAVENE YNAIYVIGDA VGDTMFYGKG
AGSLATGSAV VSDLLNVALF FESNLHTLPP HFELKTEETK EMMDGAEPVV IQEKSNYYIV
ISNNNKSLEK VEYDIKKKLP FHKSLQLVER DQDTYAIIVT GIETSPEKVL NQSGFNIKKV
YPVEGV
|
|---|
| |