Gene SERP0860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSERP0860 
SymbolmiaB 
ID3240403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStaphylococcus epidermidis RP62A 
KingdomBacteria 
Replicon accessionNC_002976 
Strand
Start bp871516 
End bp873060 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content33% 
IMG OID637167519 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_188442 
Protein GI57866805 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.116218 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATGAAG AGCAAAGAAA GGCTGGAACG ATAAATATTC TAGCTGAACG TGATCGTAAA 
GCTGAGAAAG ATTATAGTAA ATACTTTGAA CAAGTGTATC AGCCACCTAG CTTAAAAGAA
GCTAAAAAAA GAGGAAAACA AGAAGTTCAA TATAACAGAG ATTTTCATAT AGATGAAAAA
TACAAAGGTA TGGGTAAAGG TCGCACTTTT TTAATTAAAA CATATGGATG TCAAATGAAT
GCACATGACA CTGAAGTTAT GGCAGGAATA TTAAATGCAT TAGGATATAG TGCTACTTCG
GATATTAATG AAGCGGATGT GATTTTAATT AATACATGCG CCATTAGAGA AAATGCTGAA
AATAAAGTCT TTAGTGAAAT AGGAAATTTA AAACATTTAA AAAAAGAACG CCCAGATTGT
TTAATTGGGG TGTGTGGTTG CATGTCTCAA GAAGAATCAG TCGTAAATAA AATATTAAAA
TCTTATCAAA ATGTAGATAT GGTTTTTGGG ACACACAACA TTCATCATTT ACCTGAGATT
TTAGAAGAGG CATATTTATC TAAAGCGATG GTAGTTGAAG TATGGTCTAA AGAGGGAGAC
ATCATCGAAA ATTTACCTAA AGTGCGTGAC GGTCACATTA AAGCTTGGGT TAATATTATG
TATGGTTGCG ATAAGTTTTG TACTTATTGT ATTGTTCCAT TTACTAGAGG AAAAGAACGT
AGTCGTCGTC CAGAGGACAT CATTGATGAG GTTAGAGAAT TAGCAAGAGA AGGTTATCAA
GAAATTACCT TATTAGGTCA AAATGTAAAT TCATATGGTA AAGATATCGA AGGTCTGGAT
TATGAATTAG GTGACTTATT GGAAGATATT TCTAAAATTG ATATACCTCG TGTTCGTTTT
ACAACAAGTC ATCCTTGGGA CTTTACAGAT CGAATGATTG AAGTTATAGC TAAAGGTGGG
AACATAGTAC CGCATATCCA TTTGCCGGTA CAATCAGGTA ATAACCAAGT ATTAAAGATA
ATGGGGCGTA AATATACAAG AGAGAGTTAT CTTGATTTAG TTTCAAGAAT AAAGGAAGCT
ATCCCTAACG TAGCTCTAAC TACTGATATC ATAGTAGGTT ATCCAAATGA AACTGAAGAA
CAATTTGAAG AAACATTATC ATTATATGAT GACGTTCAAT TTGAGCATGC ATACACATAT
TTATATTCAC AAAGAGATGG AACACCAGCA GCTAAAATGA AGGATAACGT ACCTTTAGAA
GTGAAAAAAG AACGTTTGCA AAGGCTTAAT AAGAAGGTTG GAATATATTC TCAACAAGCA
ATGAGTCAGT ATGAAGGTAA GATTGTTACG GTATTATGTG AAGGTTCTAG TAAAAAAGAT
GAGAATGTTC TAGCAGGCTA TACTGATAAA AATAAACTTG TGAATTTTAA AGGACCAAGA
GAGAGCATTG GTAAACTCGT TGATGTCAAA ATTGACGAGG CAAAACAATA TTCTTTAAAT
GGAACATTTA TACAAGAACA TCAACGTTCA ATGGTGACAC AATAA
 
Protein sequence
MNEEQRKAGT INILAERDRK AEKDYSKYFE QVYQPPSLKE AKKRGKQEVQ YNRDFHIDEK 
YKGMGKGRTF LIKTYGCQMN AHDTEVMAGI LNALGYSATS DINEADVILI NTCAIRENAE
NKVFSEIGNL KHLKKERPDC LIGVCGCMSQ EESVVNKILK SYQNVDMVFG THNIHHLPEI
LEEAYLSKAM VVEVWSKEGD IIENLPKVRD GHIKAWVNIM YGCDKFCTYC IVPFTRGKER
SRRPEDIIDE VRELAREGYQ EITLLGQNVN SYGKDIEGLD YELGDLLEDI SKIDIPRVRF
TTSHPWDFTD RMIEVIAKGG NIVPHIHLPV QSGNNQVLKI MGRKYTRESY LDLVSRIKEA
IPNVALTTDI IVGYPNETEE QFEETLSLYD DVQFEHAYTY LYSQRDGTPA AKMKDNVPLE
VKKERLQRLN KKVGIYSQQA MSQYEGKIVT VLCEGSSKKD ENVLAGYTDK NKLVNFKGPR
ESIGKLVDVK IDEAKQYSLN GTFIQEHQRS MVTQ