| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0636 |
|---|
| Symbol | atlE |
|---|
| ID | 3241348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 627656 |
|---|
| End bp | 631663 |
|---|
| Gene Length | 4008 bp |
|---|
| Protein Length | 1335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637167297 |
|---|
| Product | bifunctional autolysin |
|---|
| Protein accession | YP_188221 |
|---|
| Protein GI | 57866522 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4193] Beta- N-acetylglucosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000166594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA AATTCAATTA CAAATTACCG TCTATGGTTG CTTTAACGTT ATTTGGCACA
GCTTTTACTG CACATCAAGC AAATGCTGCT GAACAACCAC AGAATCAGTC TAATCATAAA
AATGTATTAG ATGATCAAAC TGCCCTCAAA CAAGCAGAAA AAGCTAAAAG CGAAGTTACA
CAATCAACTA CAAATGTATC TGGTACACAA ACATATCAAG ACCCTACCCA AGTTCAACCT
AAACAAGACA CACAAAGTAC TACATATGAT GCATCATTAG ATGAAATGAG TACTTATAAT
GAAATTTCAT CAAATCAAAA GCAACAATCT TTATCAACAG ATGATGCGAA TCAAAATCAA
ACGAATTCTG TTACAAAAAA TCAACAAGAA GAAACAAATG ATTTGACACA AGAAGATAAA
ACATCCACTG ATACAAATCA ATTACAGGAG ACACAATCTG TAGCAAAAGA AAATGAGAAA
GATTTAGGAG CTAACGCAAA TAATGAACAA CAAGACAAGA AGATGACTGC AAGTCAACCT
TCCGAAAATC AAGCAATTGA AACTCAAACT GCTTCTAATG ATAATGAAAG CCAACAAAAA
AGTCAGCAAG TAACTTCTGA ACAAAATGAA ACTGCTACAC CTAAAGTATC AAATACAAAC
GCATCTGGTT ATAATTTTGA TTACGATGAT GAAGACGATG ATAGCTCAAC AGACCATTTA
GAGCCTATCT CATTAAACAA TGTGAATGCT ACATCTAAAC AAACTACTTC ATATAAATAT
AAAGAACCAG CTCAACGTGT AACAACTAAT ACTGTAAAAA AAGAAACGGC ATCTAATCAA
GCGACTATAG ATACAAAGCA ATTCACCCCA TTTAGTGCAA CTGCTCAACC GAGAACAGTT
TATTCTGTAT CTAGTCAAAA AACATCATCA TTACCGAAAT ATACACCAAA GGTTAATTCT
TCAATAAATA ACTATATTCG TAAAAAGAAT ATGAAAGCAC CAAGAATTGA AGAAGATTAT
ACGTCATATT TCCCTAAATA TGGCTATAGA AACGGTGTGG GACGTCCTGA AGGTATCGTT
GTTCATGATA CTGCAAATGA TAACTCAACA ATCGATGGCG AGATTGCTTT CATGAAACGT
AATTACACAA ATGCATTCGT ACACGCATTT GTTGATGGCA ATAGAATTAT AGAAACAGCT
CCGACAGATT ACTTATCTTG GGGTGCAGGT CCATATGGAA ATCAACGTTT TATCAATGTT
GAAATCGTCC ATACACATGA TTATGATTCA TTTGCACGTT CAATGAACAA CTACGCTGAT
TATGCTGCAA CGCAATTGCA ATATTATAAT TTAAAACCTG ATAGCGCTGA AAACGATGGA
AGAGGAACAG TTTGGACACA TGCTGCTATC TCTAACTTCT TAGGAGGTAC TGATCACGCT
GACCCTCACC AATATTTAAG AAGTCACAAT TATAGCTATG CAGAATTATA TGACTTAATT
TATGAAAAAT ATTTAATTAA AACGAAGCAA GTAGCACCTT GGGGCACAAC ATCTACAAAA
CCGTCACAAC CTTCTAAACC ATCAGGAGGA ACTAATAATA AGTTAACTGT GTCTGCTAAT
CGTGGTGTTG CTCAAATTAA ACCAACAAAT AATGGCTTAT ATACAACTGT TTATGACAGT
AAAGGTCATA AGACTGATCA AGTACAAAAA ACTCTATCCG TTACTAAAAC TGCAACATTA
GGAAATAACA AATTCTATTT AGTTGAAGAC TACAATAGCG GTAAAAAATA CGGTTGGGTT
AAACAAGGTG ATGTTGTTTA TAACACTGCT AAGGCACCAG TAAAAGTGAA TCAAACATAT
AATGTTAAAG CAGGGTCAAC ACTTTACACA GTTCCTTGGG GTACACCAAA ACAAGTTGCT
AGCAAAGTAT CTGGTACTGG AAATCAAACA TTTAAAGCAA CTAAACAGCA ACAAATTGAT
AAAGCAACGT ATCTTTATGG TACAGTGAAT GGTAAATCTG GTTGGATTAG TAAATATTAC
TTAACTACAG CATCTAAACC TAGCAATCCA ACTAAACCTT CAACAAACAA CCAATTAACA
GTGACTAACA ATAGTGGTGT TGCTCAAATC AATGCAAAAA ATAGTGGCTT ATATACTACA
GTTTATGACA CTAAAGGAAA GACAACAAAT CAAATCCAAC GTACATTGTC AGTGACGAAA
GCTGCCACAC TTGGTGATAA AAAATTCTAT CTTGTTGGTG ATTATAATAC TGGTACAAAT
TATGGTTGGG TAAAACAAGA TGAGGTCATT TACAACACAG CTAAATCACC TGTAAAAATC
AATCAAACAT ACAACGTCAA ACCTGGTGTT AAATTACACA CAGTACCTTG GGGCACATAT
AATCAAGTGG CTGGAACAGT TTCAGGTAAA GGCGATCAAA CTTTTAAAGC AACTAAACAA
CAACAAATTG ATAAAGCAAC ATATCTTTAT GGTACAGTGA ACGGTAAATC TGGTTGGATT
AGTAAATACT ATTTAACTGC ACCATCAAAA GTTCAAGCTT TGTCTACTCA ATCAACACCA
GCACCTAAAC AAGTAAAACC ATCTACACAA ACTGTAAATC AAATTGCTCA AGTGAAAGCT
AATAATTCTG GAATAAGAGC ATCTGTATAT GATAAAACAG CCAAAAGTGG TACGAAATAC
GCTAACCGTA CATTCCTTAT CAATAAACAA CGTACTCAAG GTAATAACAC GTATGTACTA
CTTCAAGATG GAACAAGTAA TACTCCATTA GGATGGGTAA ACATTAATGA TGTGACAACT
CAAAATATCG GAAAACAAAC TCAGTCTATA GGTAAATATT CAGTAAAACC TACAAATAAT
GGTCTATATT CTATTGCTTG GGGTACTAAA AACCAACAAT TACTAGCACC TAATACGCTA
GCTAATCAAG CATTTAATGC TTCCAAAGCT GTTTACGTTG GTAAAGATTT ATATCTATAC
GGTACAGTCA ATAACAGAAC AGGATGGATT GCTGCTAAGG ATTTAATCCA AAACAGTACT
GACGCTCAAT CAACACCATA TAACTATACT TTTGTTATCA ATAATAGTAA AAGTTATTTC
TATATGGATC CAACAAAAGC AAACCGATAT TCTTTAAAAC CATATTATGA ACAAACTTTC
ACAGTCATTA AGCAAAAAAA TATTAATGGC GTTAAATGGT ACTATGGTCA ACTTTTAGAC
GGTAAATATG TTTGGATAAA ATCAACTGAC TTAGTTAAGG AAAAAATTAA ATATGCATAT
ACTGGAATGA CTTTAAATAA CGCGATAAAT ATCCAATCTC GTCTTAAATA TAAACCACAA
GTACAAAATG AGCCTTTGAA ATGGTCAAAT GCTAATTATA GTCAAATTAA AAATGCTATG
GATACAAAGC GTTTAGCTAA TGATTCATCC TTAAAATATC AATTCTTACG TTTAGATCAA
CCACAATACT TGTCAGCACA AGCTCTCAAT AAATTATTAA AAGGCAAAGG TGTACTTGAA
AACCAAGGCG CTGCATTTAG CCAAGCTGCA CGTAAGTATG GTCTAAATGA AATTTATCTT
ATCTCACATG CTTTAGTAGA AACAGGTAAT GGAACTTCAC AACTTGCTAA AGGTGGAGAT
GTTTCAAAAG GTAAATTCAC AACTAAAACA GGTCACAAAT ACCATAATGT CTTTGGAATT
GGTGCATTTG ACAATAATGC ACTTGTAGAT GGTATCAAAT ACGCTAAAAA TGCTGGATGG
ACTTCTGTCT CTAAAGCAAT TATTGGTGGC GCTAAATTCA TTGGAAATTC ATACGTGAAA
GCAGGACAAA ATACGCTATA TAAAATGCGT TGGAATCCTG CAAACCCTGG TACGCATCAA
TATGCAACTG ATATTAATTG GGCAAATGTC AACGCACAAG TATTAAAACA ATTTTATGAT
AAAATTGGTG AAGTCGGTAA GTACTTCGAA ATTCCAACAT ACAAATAA
|
|---|
| Protein sequence | MAKKFNYKLP SMVALTLFGT AFTAHQANAA EQPQNQSNHK NVLDDQTALK QAEKAKSEVT
QSTTNVSGTQ TYQDPTQVQP KQDTQSTTYD ASLDEMSTYN EISSNQKQQS LSTDDANQNQ
TNSVTKNQQE ETNDLTQEDK TSTDTNQLQE TQSVAKENEK DLGANANNEQ QDKKMTASQP
SENQAIETQT ASNDNESQQK SQQVTSEQNE TATPKVSNTN ASGYNFDYDD EDDDSSTDHL
EPISLNNVNA TSKQTTSYKY KEPAQRVTTN TVKKETASNQ ATIDTKQFTP FSATAQPRTV
YSVSSQKTSS LPKYTPKVNS SINNYIRKKN MKAPRIEEDY TSYFPKYGYR NGVGRPEGIV
VHDTANDNST IDGEIAFMKR NYTNAFVHAF VDGNRIIETA PTDYLSWGAG PYGNQRFINV
EIVHTHDYDS FARSMNNYAD YAATQLQYYN LKPDSAENDG RGTVWTHAAI SNFLGGTDHA
DPHQYLRSHN YSYAELYDLI YEKYLIKTKQ VAPWGTTSTK PSQPSKPSGG TNNKLTVSAN
RGVAQIKPTN NGLYTTVYDS KGHKTDQVQK TLSVTKTATL GNNKFYLVED YNSGKKYGWV
KQGDVVYNTA KAPVKVNQTY NVKAGSTLYT VPWGTPKQVA SKVSGTGNQT FKATKQQQID
KATYLYGTVN GKSGWISKYY LTTASKPSNP TKPSTNNQLT VTNNSGVAQI NAKNSGLYTT
VYDTKGKTTN QIQRTLSVTK AATLGDKKFY LVGDYNTGTN YGWVKQDEVI YNTAKSPVKI
NQTYNVKPGV KLHTVPWGTY NQVAGTVSGK GDQTFKATKQ QQIDKATYLY GTVNGKSGWI
SKYYLTAPSK VQALSTQSTP APKQVKPSTQ TVNQIAQVKA NNSGIRASVY DKTAKSGTKY
ANRTFLINKQ RTQGNNTYVL LQDGTSNTPL GWVNINDVTT QNIGKQTQSI GKYSVKPTNN
GLYSIAWGTK NQQLLAPNTL ANQAFNASKA VYVGKDLYLY GTVNNRTGWI AAKDLIQNST
DAQSTPYNYT FVINNSKSYF YMDPTKANRY SLKPYYEQTF TVIKQKNING VKWYYGQLLD
GKYVWIKSTD LVKEKIKYAY TGMTLNNAIN IQSRLKYKPQ VQNEPLKWSN ANYSQIKNAM
DTKRLANDSS LKYQFLRLDQ PQYLSAQALN KLLKGKGVLE NQGAAFSQAA RKYGLNEIYL
ISHALVETGN GTSQLAKGGD VSKGKFTTKT GHKYHNVFGI GAFDNNALVD GIKYAKNAGW
TSVSKAIIGG AKFIGNSYVK AGQNTLYKMR WNPANPGTHQ YATDINWANV NAQVLKQFYD
KIGEVGKYFE IPTYK
|
|---|
| |