| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0068 |
|---|
| Symbol | pbuX |
|---|
| ID | 3241654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 55779 |
|---|
| End bp | 57047 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637166719 |
|---|
| Product | xanthine permease |
|---|
| Protein accession | YP_187666 |
|---|
| Protein GI | 57866021 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2233] Xanthine/uracil permeases |
|---|
| TIGRFAM ID | [TIGR00801] uracil-xanthine permease
[TIGR03173] xanthine permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00230389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT TCATATTAAG TGTGCAACAT TTGTTAGCGA TGTATGCAGG GGCTATTCTT
GTTCCTATTA TTGTGGGGAC AAGCTTAAAA TTTTCAGCTG AAGAAATTGC TTATCTAGTT
ACTGTTGATA TATTTATGTG CGGGGTAGCG ACATTTCTTC AAGCAAATAA AGTCACAGGG
ACTGGATTAC CGATTGTACT AGGATGTACG TTTACTGCCG TTGCACCTAT GATACTCATC
GGTCAAACGA AAGGACTTGA TGTTTTATAT GGTTCGCTTT TAATATCCGG TATCTTAGTT
GTTTTAATTG CACCTTTTTT CTCTTATTTA GTTAAATTCT TTCCACCTGT TGTAACAGGA
AGTGTTGTGA CAATTATTGG AATCAATTTA ATGCCAGTTG CAATGAATTA CTTGGCAGGT
GGTGAAGGAG CGAAAAACTA TGGCGATACT AAGAATTTAA TATTAGGTGG TGTTACACTA
CTCATTATTC TTATTTTGCA AAGATTTACA AAGGGCTTCT TGAAATCAAT TGCGATACTT
ATAGGATTAG CAATAGGTAC TGCTTTAGCT GGTATATTTG GAATGGTTGA TATCAAACAA
GTGGGTGATG CACATTGGTT TGGTTTCCCT GTGCCATTCA GATTTTCTGG CTTCGGATTT
GATGTCAGCT CAATACTTGT ATTTTTCATT GTTGCAGTTG TAAGTTTAAT TGAATCTACT
GGTGTCTATC ATGCACTGAG TGAAATTACT GGTAGAAAAC TAGAAAGAAA AGATTTTCGA
AAAGGGTACA CTGCGGAAGG TCTAGCAATC ATTTTAGGTT CAATATTTAA TGCGTTCCCT
TACACTGCAT ATTCCCAAAA TGTAGGTCTT GTTTCTTTAT CAGGAGCTAA AAAGAACAAT
GTGATATATG GAATGGTTAT TCTTTTACTA ATTTGCGGTT GTATACCTAA ATTAGGTGCT
TTAGCTAATA TTATTCCATT GCCGGTTTTA GGTGGAGCAA TGATAGCAAT GTTTGGAATG
GTTATGGCAT ACGGCGTTAG TATTTTGGGT AACATTAATT TCCAAAATCA AAATAATTTA
TTAATTATTG CAATTTCAGT AGGGTTAGGT GCTGGTATTA GTGCAGTACC TCAAGCATTT
AAAGGATTAG GAGAACAATT TGCTTGGTTA ACTCAAAATG GTATAGTGCT TGGCGCAATT
TCTGCAATCA TCTTAAATTT CTTTTTTAAT GGTATAAAGT ATAAACAAAC TGAAGAAAAT
GTGAAATAA
|
|---|
| Protein sequence | MKNFILSVQH LLAMYAGAIL VPIIVGTSLK FSAEEIAYLV TVDIFMCGVA TFLQANKVTG
TGLPIVLGCT FTAVAPMILI GQTKGLDVLY GSLLISGILV VLIAPFFSYL VKFFPPVVTG
SVVTIIGINL MPVAMNYLAG GEGAKNYGDT KNLILGGVTL LIILILQRFT KGFLKSIAIL
IGLAIGTALA GIFGMVDIKQ VGDAHWFGFP VPFRFSGFGF DVSSILVFFI VAVVSLIEST
GVYHALSEIT GRKLERKDFR KGYTAEGLAI ILGSIFNAFP YTAYSQNVGL VSLSGAKKNN
VIYGMVILLL ICGCIPKLGA LANIIPLPVL GGAMIAMFGM VMAYGVSILG NINFQNQNNL
LIIAISVGLG AGISAVPQAF KGLGEQFAWL TQNGIVLGAI SAIILNFFFN GIKYKQTEEN
VK
|
|---|
| |