| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0005 |
|---|
| Symbol | gidB |
|---|
| ID | 3240518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 4658 |
|---|
| End bp | 5377 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637166658 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_187605 |
|---|
| Protein GI | 57865944 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.194064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTG AATGGTTATC AGAGAAATTA AGCGAGCAAG GCATAGAACT ATCTAATACG
CAAAAAGAGC AATTTCAAAA ATATTATAAA TTACTTGTTG AATGGAACAA AAAAATGAAT
TTGACAAGTA TTACTGATGA ACATGATGTT TATTTAAAAC ATTTCTATGA TTCAATAGCG
CCTAGTTTCT ATTATGATTT TAACGGTCAA TTAAGTCTTT GTGATATCGG TGCTGGTGCA
GGTTTTCCAA GTATACCTTT AAAGATAGTA TACCCTGAAT TGAAAGTAAC GATTGTAGAT
TCTCTAAATA AAAGAATACA ATTTCTAAAT CATTTAGCTG CAGAACTAGG TCTTGAAGAT
GTTAGTTTTG TGCATGATCG AGCAGAAATA TATGGCAAGG GTGTCTACAG GGAGTCTTAT
GATATTGTTA CAGCTCGTGC AGTAGCGAGA TTGACTGTCT TAAGTGAGTT GTGCTTACCT
TTAGTAAAAA AAGGTGGACA GTTCCTTGCA CTTAAATCAT CAAAAGGTGA AGAAGAATTG
CAAGAAGCGA CGTTTGCTAT TAACATTTTA GGTGGTAATG TGAAAGAGAC TCATACTTTT
GAATTACCTG AAAATGCCGG TGAGCGACAA ATGATTATTA TTGATAAACG TAGACAGACA
TCAAAAAAAT ACCCAAGAAA ACCAGGTACG CCAAACAAAT CTCCACTAGT TGAAAGTTAA
|
|---|
| Protein sequence | MSIEWLSEKL SEQGIELSNT QKEQFQKYYK LLVEWNKKMN LTSITDEHDV YLKHFYDSIA
PSFYYDFNGQ LSLCDIGAGA GFPSIPLKIV YPELKVTIVD SLNKRIQFLN HLAAELGLED
VSFVHDRAEI YGKGVYRESY DIVTARAVAR LTVLSELCLP LVKKGGQFLA LKSSKGEEEL
QEATFAINIL GGNVKETHTF ELPENAGERQ MIIIDKRRQT SKKYPRKPGT PNKSPLVES
|
|---|
| |