| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0003 |
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| Symbol | trmE |
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| ID | 3240516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 1329 |
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| End bp | 2708 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637166656 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_187603 |
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| Protein GI | 57865942 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000387737 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTG ATACGATTAC AAGTATTTCA ACACCGATGG GTGAAGGTGC TATTGGAATT
GTGAGATTAT CTGGGCCACA AGCTATTGAA ATCGGAGATA TCTTATATAA AGGAAAGAAA
AAGTTATCTG AAGTTGAGAC GCATACAATA AATTACGGTC ATATTATTGA TCCAGAAACA
AATGAAACAG TTGAAGAAGT CATGGTGTCT GTATTACGTG CCCCTAAAAC TTTCACACGA
GAAGATATTA TTGAGATAAA TTGCCATGGT GGTATTTTAA CAATTAATCG TATATTAGAG
TTAACTATGA CTTATGGTGC ACGTATGGCA GAACCAGGTG AATATACAAA ACGTGCATTT
TTAAATGGTC GTATAGATTT ATCTCAAGCA GAAGCGGTTA TGGATTTTAT ACGTTCCAAA
ACTGATCGAG CTTCTAAGGT TGCGATGAAT CAAATAGAAG GACGTTTAAG TGACTTAATC
AAGAAACAAC GTCAATCCAT ATTAGAGATA CTCGCCCAAG TTGAAGTTAA CATTGATTAT
CCAGAGTATG ATGATGTAGA AGACGCAACG ACGGACTTCT TACTAGAACA GTCTAAGCGT
ATTAAAGAAG AAATCAATCA GTTACTTGAA ACAGGAGCAC AAGGTAAAAT AATGAGAGAA
GGGTTATCTA CAGTTATTGT AGGACGTCCT AATGTTGGGA AGTCTTCGAT GCTAAATAAC
CTTATTCAAG ATAATAAAGC AATTGTGACT GAGGTCGCTG GTACAACAAG AGACGTGTTA
GAAGAATATG TCAATGTTAG AGGTGTCCCG TTACGACTTG TAGATACTGC GGGTATTAGG
GATACTGAAG ATATCGTAGA GAAGATTGGT GTAGAACGTT CTAGGAAAGC TCTAAGTGAA
GCAGATTTAA TTTTATTTGT GCTTAATAAC AATGAACCTC TGACGGAAGA TGATCAAACT
TTATTCGAAG TCATTAAAAA TGAGGATGTT ATTGTAATCA TTAATAAAAC AGATTTAGAA
CAGCGATTAG ATGTTAGCGA ACTAAGAGAG ATGATTGGTG ATATGCCACT TATACAAACA
TCGATGCTTA AACAAGAAGG TATTGATGAA TTAGAAATAC AAATTAAAGA TTTATTCTTT
GGTGGCGAAG TACAAAATCA AGATATGACT TATGTATCTA ATTCACGTCA CATTTCATTG
TTGAAACAAG CGAGACAATC AATTCAAGAT GCGATTGATG CTGCTGAGTC TGGTATCCCA
ATGGATATGG TACAGATTGA TTTAACACGT ACTTGGGAAA TTCTAGGAGA AATTATTGGA
GAATCAGCGA GTGATGAATT AATAGATCAA CTATTTAGTC AATTTTGTTT AGGAAAATAA
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| Protein sequence | MDFDTITSIS TPMGEGAIGI VRLSGPQAIE IGDILYKGKK KLSEVETHTI NYGHIIDPET
NETVEEVMVS VLRAPKTFTR EDIIEINCHG GILTINRILE LTMTYGARMA EPGEYTKRAF
LNGRIDLSQA EAVMDFIRSK TDRASKVAMN QIEGRLSDLI KKQRQSILEI LAQVEVNIDY
PEYDDVEDAT TDFLLEQSKR IKEEINQLLE TGAQGKIMRE GLSTVIVGRP NVGKSSMLNN
LIQDNKAIVT EVAGTTRDVL EEYVNVRGVP LRLVDTAGIR DTEDIVEKIG VERSRKALSE
ADLILFVLNN NEPLTEDDQT LFEVIKNEDV IVIINKTDLE QRLDVSELRE MIGDMPLIQT
SMLKQEGIDE LEIQIKDLFF GGEVQNQDMT YVSNSRHISL LKQARQSIQD AIDAAESGIP
MDMVQIDLTR TWEILGEIIG ESASDELIDQ LFSQFCLGK
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