| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2576 |
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| Symbol | |
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| ID | 2741280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 2601812 |
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| End bp | 2602546 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637161469 |
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| Product | RNA pseudouridylate synthase family protein |
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| Protein accession | NP_973174 |
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| Protein GI | 42528076 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0224111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAAA AACTTTATGA AATCTTATAT GAAGATAAGG ATATTCTCAT TGTAAATAAA
AATGCCGGCC TCCTCGTAGG AGCCGACCGC TGGGACAGCG AAGCTCCCCG CCTTGATAAG
ATACTTGAAG AACTTTACAA GGATAAGGGC GAGAGGAAAA TTTATCCTGT CCACAGGCTC
GATAAGGAAA CTTCAGGCCT CATCATCTAT GCCCTAAATG CGGAAGCCCA TAAAACTTTA
AACGATGATT TTCAAAACCG CAAAATCGAA AAAATCTATC ATGCGGTATC AGCCGGTATT
CCTCAAGAAG AAAATTTTAA GGCTGAGGAA AAACTTAGAA TAGATGGGGA CAAGCTGCAC
CGCACCGTCA TAGACGAAAA AAAAGGAAAA GAGTCTTTAA CCGAATTCAG CCTTCTTAAA
AGATTCAGCC GCTTTTGCCT TTTGGAAGCC CGTCCCATAA CGGGCAGAAC CCATCAAATA
AGGGCTCACC TAAAACACCT TGGGCTTCCT ATCCTATGCG ATAATCTTTA CGGAAACGGA
GAGCCCGTCT ACATATCGGC CTTAAAAAAA AATTGGAGAG GCGACAAATA TGAGGAGCGT
CCTATAATCT CTCGTCTTGC CCTCCACGCT CATTCCTTAA AATTCTTTCA TCCTATAAGC
AAGGAAAAAA TCGAAATAAG TGCGGATTAC CCTAAGGATA TGGCAGGCCT CATAAACCAG
CTTTCTAAAA TATAA
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| Protein sequence | MKKKLYEILY EDKDILIVNK NAGLLVGADR WDSEAPRLDK ILEELYKDKG ERKIYPVHRL
DKETSGLIIY ALNAEAHKTL NDDFQNRKIE KIYHAVSAGI PQEENFKAEE KLRIDGDKLH
RTVIDEKKGK ESLTEFSLLK RFSRFCLLEA RPITGRTHQI RAHLKHLGLP ILCDNLYGNG
EPVYISALKK NWRGDKYEER PIISRLALHA HSLKFFHPIS KEKIEISADY PKDMAGLINQ
LSKI
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