| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2142 |
|---|
| Symbol | |
|---|
| ID | 2739401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2175909 |
|---|
| End bp | 2178047 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637161032 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | NP_972743 |
|---|
| Protein GI | 42527645 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC GTTTTTCAAT CCGTTATAAA CTCATCTTGA TTTTCGCTAT TTTTATTATA
ACACTTGTTT TTCTTATTAC AGCCATTATT GGTTTTCAAA TTAGAAAAAC AGATCGGGAG
CGATTTCATA AAAATATGCA GCAAAATATC AAATTGATAG AATGTGATAT CAATTTATTT
TTCGATAATA CAAAATATAT GTTGCGTATG CTATCCGGCC ACTCAGATGT GCGGAACGCC
GATAGTTCTT TTAACGAATA TATTTCAAAA ACTGAAGTAT CCGATATCGA TACCATAGAA
AAAAGAGCAA CGGAAACAGC CGTATTTAAT TTATTCAAAA ATATTCATAA AAGCTATCCG
TATTATATGT GCGTTTTTAT GGGAACAAAG TGGGGCGGCT ATACATCAAC GTGTGACAAG
GCGCTTTCAG GCGGTTATGA TCCGAGAAAA CGGCCTTGGT ATGAGGCAGC TTCTAAGGTT
CCTGAAAAGC CGATCGTTAC GGAAGCCTAT CGTTCTACGG TAGGCGATAC GGTTATCTGT
CTTTCACAGG GTGTTTTTTC TTTTCAAAAT GAACATATCG GCAATGTTAG TATAGAAGTT
TCATTACAAA CACTAACCGA AATGCTAAAA GCTCTGGCAA TAGGCAAAAC AGGTTATATT
ATGCTGGTAC AAGGGGACGG AACAATACTG GCTGATCCGA AAAACGATTC TTTTAATTTT
AAGAAAATGG AAGATGTGAA TATTCCGGCT TTCACACAAT TTACAGCAGC AGATTCGGGA
AGTATGACCG TAAACATACA TAACAAAAAA TGGCTGGCCG AACTATACAC CATTGATAGT
TTAAACTGGA AGCTGATAGC GTTGATGCAA GAAGATGAAG TCTTTTCGGA ATTTTATCGG
GTATTACGTT CTATATTGAT GATCGGTTTT ACGCTATCGA TAATCTTTTT AGCTATCTCT
TTGATGTTTG CATTTCATAT TACAAAAACA TTGGATTCGG CCGTTGACGC CCTAAAAGAC
ATCGCCCAAG GCGAAGGCGA CCTTACCGTC CGACTGCCCG TGCATGGCAA TGACGAAGTT
ACCGACCTTT CCAACTACTT TAACCAAACT ATTTCCAAAA TCGGAGCCTC AATTAAAACC
ATCGGCGAAA ACAGCACTGA AATGACCAAC ATCGGCAATG AGCTTGCTTC CAATATGACC
GAAACCGCGA GTGCCGTACA CCAAATAAGT GCAAACATCG ACGGGGTAAA ACAACAGGCT
CTTAGCCAAG CCGCAAGCGT TACGGAAACG GCCGCCACCA TCGAAGAAAT TATCCGTACC
ATAAAACAGC TTAACGGGAG TATTGAAAAT CAGGCAGCTT CCGTTGCGGA ATCTTCTTCG
GCTATCGAGC AGATGGTCGG CAATATCGCA TCAATCACAC AGACACTCGG CAAAACCGAT
GATGTTATAA AAACTCTCGC TTCCGCCACA GCCGACGGTA AGGAAACGAT AGTTAATTCA
AACTCTGTTA CCCAGCGTAT TGCAGAAGAA TCGGGCGGAC TTTTGGAAGC CAGTAATGTT
ATTCAGCACA TCGCCAGCCA AACCAACTTG CTCGCAATGA ACGCCGCAAT CGAAGCCGCC
CACGCAGGCG AAGCAGGAAA AGGCTTTGCT GTCGTTGCCG ATGAAATTCG TAAGCTCGCA
GAAGAATCAA GCACTCAGGG AAAAACAATC ACTTCTACCC TCAAAGTCCT CTCCGGCGAG
ATTGAGGCTC TTTCAACCTC GTCAAAAACG GCAGAAGAAA AGTTCAATGC CATCTTCGCC
CTTTCCGAGC AGGTCAAAAC GATGAGCCAA AACCTCATGG AAGCTATGCG TGAACAGGAA
AACGGCAGCC GCGAAGTTCT CAGTGCCATC CGCGACATCA ACACCGTAAC TAATCAAGTG
AACGACGGCT CTGCCGAAAT GCTCCGCGGT GGTGAAAATG TCGCTCAAGA GATGCAAAAA
CTGGACGGTC TGACACGCAT CATTACCGAC AGTATGAACG AGATGGCCTC CGGTGCCGTG
CAGATAAGCA ACGCTGTACA AGAAGTAAAC GCAATAAGCC AAAAGAATAA AGAGAGCATT
GAAAACCTCT CCAAAGAGGT CGGAAAGTTT AAGGTGTGA
|
|---|
| Protein sequence | MKKRFSIRYK LILIFAIFII TLVFLITAII GFQIRKTDRE RFHKNMQQNI KLIECDINLF
FDNTKYMLRM LSGHSDVRNA DSSFNEYISK TEVSDIDTIE KRATETAVFN LFKNIHKSYP
YYMCVFMGTK WGGYTSTCDK ALSGGYDPRK RPWYEAASKV PEKPIVTEAY RSTVGDTVIC
LSQGVFSFQN EHIGNVSIEV SLQTLTEMLK ALAIGKTGYI MLVQGDGTIL ADPKNDSFNF
KKMEDVNIPA FTQFTAADSG SMTVNIHNKK WLAELYTIDS LNWKLIALMQ EDEVFSEFYR
VLRSILMIGF TLSIIFLAIS LMFAFHITKT LDSAVDALKD IAQGEGDLTV RLPVHGNDEV
TDLSNYFNQT ISKIGASIKT IGENSTEMTN IGNELASNMT ETASAVHQIS ANIDGVKQQA
LSQAASVTET AATIEEIIRT IKQLNGSIEN QAASVAESSS AIEQMVGNIA SITQTLGKTD
DVIKTLASAT ADGKETIVNS NSVTQRIAEE SGGLLEASNV IQHIASQTNL LAMNAAIEAA
HAGEAGKGFA VVADEIRKLA EESSTQGKTI TSTLKVLSGE IEALSTSSKT AEEKFNAIFA
LSEQVKTMSQ NLMEAMREQE NGSREVLSAI RDINTVTNQV NDGSAEMLRG GENVAQEMQK
LDGLTRIITD SMNEMASGAV QISNAVQEVN AISQKNKESI ENLSKEVGKF KV
|
|---|
| |