Gene TDE2110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2110 
SymbolpyrF 
ID2740349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp2135469 
End bp2136371 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content41% 
IMG OID637161000 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionNP_972711 
Protein GI42527613 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTACA TCGACTTATT AAAAACTTCG GCAAAAAAAA CGAATAACTG TGCATGTATG 
GGCTTAGACC CGATTTTTGA AGCTGTTCCT AATAAAACCG GAATGGTAAA GGATAATCTT 
GTAAGCTTTT TTAAAGAGCT TTTCAATAAG ATGCAGGAAA AGAATTTGAT TCCCGCAGCT 
TTTAAACCGA ATATAGGTTA CTATTCGGCC CTTGATAAGC CCAGAGAAAA AGATTTTTCG 
GGTTCCGAAA GCCTTGCAGA AATTTTATCC CTAATCGAAA AACACTTCCC CGGTATTCCT 
GTAATCCTCG ATTCAAAGCG GGGAGATATT GCCCGCTCCA GTCTTAACTA TGCTATCGAA 
GCCTTCGACG GCTGGAAGGC GGATGCGGTA ACGGTCAGTC CCTACATGGG AAGCGATTCT 
ATTCTTCCCT TTATTTCGGA AAAGTATTTG GATAAGGGAG CTTATATTTT AAACCGGACA 
AGTAATCCCG GAGCAAAGGA TTTTCAAAAC CTTAAAACCG ATTCTGAGGG TAAAAATAAT 
TCGGAGCTTT ATATCGAGGT TGCAAAAAAG ATTGCTTTTT ATGCAAAGGA ATTTCCGGGA 
ACGGGAGCCG TTGTCGGAGC TACGGGAATG GAAGAGCTAA AAATAATTTC GGGTATTTAT 
GCCCAAGCAG GAGAGGTCCC CATGCTGATT CCGGGAGTCG GCTCCCAAGG AGGAGATGCA 
AAAACGGTAA TGGAAGTTCT TAAAAATTCC GGCTGCAATT TAGCCCTTAT AAGAATAAAC 
AGCTCCAGTG CCTTAACCCA TCCTTGGAAA AAAGCACCTG TGCCTGAAAA CTATTTGGAG 
CTTTGTATAA ACAATATCGA AAAACTTCTA AACGAGACGG CAATAAACAA CATCAGTTTT 
TAA
 
Protein sequence
MNYIDLLKTS AKKTNNCACM GLDPIFEAVP NKTGMVKDNL VSFFKELFNK MQEKNLIPAA 
FKPNIGYYSA LDKPREKDFS GSESLAEILS LIEKHFPGIP VILDSKRGDI ARSSLNYAIE 
AFDGWKADAV TVSPYMGSDS ILPFISEKYL DKGAYILNRT SNPGAKDFQN LKTDSEGKNN 
SELYIEVAKK IAFYAKEFPG TGAVVGATGM EELKIISGIY AQAGEVPMLI PGVGSQGGDA 
KTVMEVLKNS GCNLALIRIN SSSALTHPWK KAPVPENYLE LCINNIEKLL NETAINNISF