Gene TDE1990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1990 
Symbol 
ID2740443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp2006457 
End bp2008586 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content40% 
IMG OID637160880 
ProductATP-dependent helicase DinG 
Protein accessionNP_972593 
Protein GI42527495 
COG category[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATACT TTGATGATGA TTATTTTGAC GACGAAAAAA TATACCCCCT GGACCCTAAA 
ACGGTTTCTT CTCTTTTGGA GGAGGATGGA CCCCTTGCTT CTTTTTTTGA AAGATACGAA
GCCCGTGAGC CGCAGCTTGC TTTAACAAAA TCGATTTGCC GCTGTTTTAA TGAAGAGGCT
ATAGGCGTCT TTGAGGCCGG TACCGGGGTA GGGAAGAGCC TTGCTTATCT TTTGCCTGCA
ATGATGTGGG CAAAACAAAA TAAAAAACGC GTTGTAATTT CTACAGGGAC TATAAATTTA
CAGCAGCAGC TCATCGAAAA GGATGTTCTT ACTGCAAAGA AAATTTTGGG AAAGGGTTTT
CAGGATATGA AGGCTTGCCT TGTAAAGGGG CGGCATAATT TTTTATGCTT ACGCCGGATG
ACTCAGGCAT TAAGGGAGAA CGATTTTTTT ACTGAAGGAC AGGAAGAACT TGACAAGATA
AAAGAATGGG CAACCGAAAC AAAGGACGGC AGCCGCTCGG ACCTTGATTT TATGCCGACG
GAAAAAGTTT GGTCTACTGT TTGTTCCGAG CCCGATAACT GCCCTATGAA TAAGTGCCCT
TATTTTTCAG GCTGCTTTGT GATGAAGCTA AAACGCGAAG CGGAAAACTC TTCCATACTG
GTTGCTAATC ATCACATTTT ATTTGCAGAC CTTTCAGTTA GGGCAGAAGG CTTCGGCTAT
CAGGGAACGG CAGTTCTTCC TTCTTACGAT AATATAATAA TCGATGAAGC TCACGGAATT
GAAGACGCTG CACAAAGTTT TTTTTCAAGC GATATTTCCC GCTTTGCCTT GCACAAGCAA
ATCAACTTAC TTTACCGCTT TAGGCGAGGA AAGCAGGCAG GCATTTTAAG CGGCATAGTT
TCAATCTCCA AAAAGGCGGA ACTTTTTACC GAAATCATAA ATCTTCTTGA AGTTGCTGCA
GCTTCTTTTA ATATTCTTGA AGAACAAGCC TTGCAGGTTC TGCAAACCTA TCAGTCAAAA
AGCCTCGCAC AAACTTCAAG CGATGAAAAG GAAAAGCTCT TATCTTGTGT AGACAATTTT
TTTAAAAACA TAAACAACCT AAACATAAAA CTTGAAAACC TTATTAATGC AGCTGATGGA
GAAGAAGATG AAGAAGGCTA TATAAGAGAG GGTCTTGTAG TCTTGCGCCG CTTAAAAAAA
ATGGCTTCCG TAATGGAAAA CTTTTTAAAC AGCAGCGAAT TCCCAAACGA TGTTTTTTGG
TTTGAAAAAA TAAAAACCTC TCAAGGGGAG GCTGTCCGCT TTATTCAGAC ACCGTTAAAT
TTGGCACCGA TAATGCGGCG TTCGGTTTTT ATGCCCATGG CAACGGTCAT CTGTGTTTCC
GCTACCTTAA AAATCGGAGA CGATTTTAAC TTTTGGCTTA ATAGAAACGG CCTTTATAAT
TTTACCGAAA AGAAAATTAT AAAAGATTTT TTCCCTTCTC CTTTTCCATA CGAAAAAAAT
GTTGTCTTTA ATATTCCGAC AGATATGCCC ATGCCTGATG AAAACAATTT TCAAGATGCC
GTAAACGAAA CCGTCCTCGC CTTATTGGAA ATAACCCAAG GCAAGACCCT TATTTTGTTT
ACGTCTTATG ATTCTCTTCA AAAAACTTGC GAATATGTAA GAGAGCATAT TGATGAAAAA
ATAAAGATTT TAAAACAGGG CGAGGCGGAT AGAATGCAGC TTTTATACGA ATTTAAAGAT
GATGTTACAA GCTGCTTATT TGCGACTTCG TCTTTTTGGG CAGGGGTGGA CGTTCCGGGA
GAATCCCTTT CCCACGTAAT TTTGGTAAAA CTTCCCTTTG CGGTTCCGAC CGAACCCATA
TTTAAAGCAA GGGCGGACTT AATCGAAAAA TCGGGCGGAA ATTCATTTAT GCAGTTGAGC
GTTCCCGAAG CTGTTGTACA ATTTAGGCAG GGTTTTGGAA GGCTCATGCG TTCCAATACC
GACAGGGGTA TAGTTACCGT CTTGGATAAA AGAATTTTAG TAAAGCGTTA CGGTTCAATA
TTTATTCAAA GCATTCCGCA AACAATTCAA TGTTTTTCGG AAACAAAAGC CGTATTGAAT
AAAATAGAAG ATTTTTTGTA TAATAACTAG
 
Protein sequence
MEYFDDDYFD DEKIYPLDPK TVSSLLEEDG PLASFFERYE AREPQLALTK SICRCFNEEA 
IGVFEAGTGV GKSLAYLLPA MMWAKQNKKR VVISTGTINL QQQLIEKDVL TAKKILGKGF
QDMKACLVKG RHNFLCLRRM TQALRENDFF TEGQEELDKI KEWATETKDG SRSDLDFMPT
EKVWSTVCSE PDNCPMNKCP YFSGCFVMKL KREAENSSIL VANHHILFAD LSVRAEGFGY
QGTAVLPSYD NIIIDEAHGI EDAAQSFFSS DISRFALHKQ INLLYRFRRG KQAGILSGIV
SISKKAELFT EIINLLEVAA ASFNILEEQA LQVLQTYQSK SLAQTSSDEK EKLLSCVDNF
FKNINNLNIK LENLINAADG EEDEEGYIRE GLVVLRRLKK MASVMENFLN SSEFPNDVFW
FEKIKTSQGE AVRFIQTPLN LAPIMRRSVF MPMATVICVS ATLKIGDDFN FWLNRNGLYN
FTEKKIIKDF FPSPFPYEKN VVFNIPTDMP MPDENNFQDA VNETVLALLE ITQGKTLILF
TSYDSLQKTC EYVREHIDEK IKILKQGEAD RMQLLYEFKD DVTSCLFATS SFWAGVDVPG
ESLSHVILVK LPFAVPTEPI FKARADLIEK SGGNSFMQLS VPEAVVQFRQ GFGRLMRSNT
DRGIVTVLDK RILVKRYGSI FIQSIPQTIQ CFSETKAVLN KIEDFLYNN