Gene TDE1912 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1912 
Symbol 
ID2740410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1929316 
End bp1929948 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content40% 
IMG OID637160798 
Productredox-sensing transcriptional repressor Rex 
Protein accessionNP_972515 
Protein GI42527417 
COG category[R] General function prediction only 
COG ID[COG2344] AT-rich DNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0633376 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAC AAAAAGTACC GGCGGCCCCA TCTGTACGGA GGCTGCCTTC TTATCTTCAC 
CTTGTAAAAA AAGCAGAGGC CGATAAGTTG GAATACATAT CGGGAACGGT CATTGCCGAA 
GAGTTGGAAC TTGAACCCAT TCAGGTTAGA AAGGACCTGA CAATTACGGG AATTGTAGGT 
AAGCCCAAAA AAGGCTATCC CGTCAAATTA CTGATAACGG CCATCGAAAA ATTTTTAGGC 
TGGAATAAAG AAAAAAAGGC CTTTGTAATA GGGGCAGGAA GTTTAGGTAC AGCTCTTTCA 
GGCTACCAAG GTTTTAAAGA ACATGGGCTG GACATTTGTG CCGCCTTTGA TTCAGACAAA 
AGAAAAATTG GAAAAGAAAT TCATGAACTT CCTGTGTTTG GAATGGATGA ATTGGAAACA 
AAAGTTAAAG AATATAAGCC CGAAATCGCT ATTTTGACGG TTCCTTCAAA ATATGCTCAA 
GAGGCCGCAA ACGCCATTGT AAAAGCCGGA ATCAAGGCAA TTTGGAATTT TACAAATATC 
AAAATCACCG TGCCCGATAA GGTTATAGTC CAAAAAGAAG ATTTAAGCTC AGGTTATGCA 
ATGCTCGGCG TTATGATGAA TACCAAAAAA TAA
 
Protein sequence
MAKQKVPAAP SVRRLPSYLH LVKKAEADKL EYISGTVIAE ELELEPIQVR KDLTITGIVG 
KPKKGYPVKL LITAIEKFLG WNKEKKAFVI GAGSLGTALS GYQGFKEHGL DICAAFDSDK 
RKIGKEIHEL PVFGMDELET KVKEYKPEIA ILTVPSKYAQ EAANAIVKAG IKAIWNFTNI 
KITVPDKVIV QKEDLSSGYA MLGVMMNTKK