Gene TDE1506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1506 
SymbolsdhA 
ID2739712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1554242 
End bp1555132 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content46% 
IMG OID637160386 
ProductL-serine dehydratase, iron-sulfur-dependent, alpha subunit 
Protein accessionNP_972112 
Protein GI42527014 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1760] L-serine deaminase 
TIGRFAM ID[TIGR00718] L-serine dehydratase, iron-sulfur-dependent, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0178055 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAA TAGAGTATAA AAAAATAGAA GACCTGATAC AAAAAGCAGC CGAAAATTCT 
TTAAGAATTT CGGATATTAT TTTAGAAGAC CAAAGCTCCG CCCTTGAAGA AACTAAGGAG 
CAGTGCTTTG AGAGAATGCA GGAGCATTTA AACGTAATGC TTGAAGCAAT TGACAAAGGA 
ACAAACCCGG ATATACGCTC GACAAGCGGG CTTACGGGCG GAGATGCCTA TAAAATATAC 
GAAAGATCGG AAAACGGAAA AGCTCTCTGC GGGCCCCTCC TTGCTAACGG TATAAGAATG 
GCAATGGCCG TTTCCGAATT AAATGCTTCA ATGGGAAAAA TAGTTGCAGC CCCCACTGCC 
GGCTCTTGCG GTATTCTCCC CGGTGCAATC GGAGCCGTTC TAAAAACAAA GGATGTAAAA 
AAAGAAGATG CAGTTATGTC TCTTTTTACG GCCGGAGCTA TCGGCATGGT TATAGCGAAT 
ACGGCTTCCA TTTCGGGAGC TGAAGGCGGA TGTCAAGCCG AATGCGGCTC AGCCTCAGCC 
ATGGCAGCAG GAGCTATAGT GGAAATGTGC GGAGGAACAC CTGAAATGGT AGGCCATGCA 
ACGGCTATTG CCCTTAAATG TATCTTGGGT CTTGTTTGCG ATCCTGTAGC AGGCTTGGTT 
GAAGTTCCTT GCGTAAAACG GAATGCTTCC GGTGTAAGCC TTGCCTTTAC GGCAGCAGAG 
CTTGCCCTGG CAGGAATCAA AAGTGCTATT CCCGTAGACG AGGTTATAAT AGCCATGAAA 
AAAGTCGGAG ATTCTATACC TTCAGCCTTG AGAGAAACTG CCGAAGGAGG TCTCGCCTGT 
ACAGCCACAG GCAAAAGACT TCAAAAAGAA ATATTCGGAA AAACTTTATA A
 
Protein sequence
MKTIEYKKIE DLIQKAAENS LRISDIILED QSSALEETKE QCFERMQEHL NVMLEAIDKG 
TNPDIRSTSG LTGGDAYKIY ERSENGKALC GPLLANGIRM AMAVSELNAS MGKIVAAPTA 
GSCGILPGAI GAVLKTKDVK KEDAVMSLFT AGAIGMVIAN TASISGAEGG CQAECGSASA 
MAAGAIVEMC GGTPEMVGHA TAIALKCILG LVCDPVAGLV EVPCVKRNAS GVSLAFTAAE 
LALAGIKSAI PVDEVIIAMK KVGDSIPSAL RETAEGGLAC TATGKRLQKE IFGKTL