| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1387 |
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| Symbol | |
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| ID | 2741148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 1426905 |
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| End bp | 1427822 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637160266 |
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| Product | RNA pseudouridylate synthase family protein |
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| Protein accession | NP_971993 |
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| Protein GI | 42526895 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAG AAAATAAGAT TTTTTATATA GGCGAAGATG ATTCAGGCAG GAGACTGGAC
CGTGTAATAC GAAAATTTTT AGGAAAGATG CCCCTTTCCG GCGTATATTC GGCAATACGC
AGAGGGAAGA TAAGGGTCAA CGGTAAAAAA GAAAACGGAG CCTACTTAAC CCAAAAAGGC
GATGAAATTT CAATGGATTT GAGCCTATTC GGCTTAACTG CACCCGCATC AGAAGATCAA
ACAAATTATT CAATTTCAAA ACCTGACGTT CTATTAAAAA CCGATGATTT ACTCTTTATA
AACAAAAGAT CCGGAGAGCT TGTACATGGA GAAAAAAGTC TTTGTGAGGC TGTTTTAAAA
TATTTTCCGT CAAAAGAAAA AAGTCTTTCC TTTAAAGTAG GAGCCCTGCA TAGACTGGAT
AAGGATACAA GCGGAATTCT GGCCTTTTCT CAAAGTTTAA AAGGAGCACA GGGATTTTCA
AGGGCCCTGC AGGAAGGAAA GATAGGTAAA TTTTACATCG GAATAACTGA GGGGCGCCCT
TCTTTAAGCG AATTTAAAAG CATAATCGAC GGAAAAGAAT GTCTTTGTCT TATAAGAATT
CTTGATTTTT CAAAAGAAGA AAATTTAAGT CTTGTGCTTT TTAATCTTAT AACCGGAAGG
AAGCACCAAA TAAGAATACA ATGCTCTCAG TTCGGCACTC CCCTTTTAAA CGATAAAAAA
TACGGCTCAA AACAAAAAAA AGCATTTTCT GAAGATTTAT CAAAAAAAAC TACATATTTT
TTACATGCCT ATAAGTTAAT ATTTTCGGAA CCGTTTTTAG ACGACTTACC AAAGGAGATT
ACCGCCCCCC TTCCCGAAAA CTTTAAGAGG GCGGTCAAAA GTTTATTTGG TATAGATTTG
GCAAGCTTAA AAACTTAG
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| Protein sequence | MSKENKIFYI GEDDSGRRLD RVIRKFLGKM PLSGVYSAIR RGKIRVNGKK ENGAYLTQKG
DEISMDLSLF GLTAPASEDQ TNYSISKPDV LLKTDDLLFI NKRSGELVHG EKSLCEAVLK
YFPSKEKSLS FKVGALHRLD KDTSGILAFS QSLKGAQGFS RALQEGKIGK FYIGITEGRP
SLSEFKSIID GKECLCLIRI LDFSKEENLS LVLFNLITGR KHQIRIQCSQ FGTPLLNDKK
YGSKQKKAFS EDLSKKTTYF LHAYKLIFSE PFLDDLPKEI TAPLPENFKR AVKSLFGIDL
ASLKT
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