Gene TDE1208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1208 
SymboltopA 
ID2740102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1240327 
End bp1242492 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content37% 
IMG OID637160086 
ProductDNA topoisomerase I 
Protein accessionNP_971815 
Protein GI42526717 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000400838 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAACA CGATGAATGA AACAAAAAAA ACTAAACGTA CTGCAAAAAA AACAAAACAG 
CATTGCTTGG TTATAGTCGA GTCCCCCGCA AAGGCTAAGA CAATCGAAAA ATATTTAGGA
GGCGATTATA TCGTAAGAGC TTCTATGGGG CATTTGATAG ATTTGCCTAA ATCAAGATTG
GCAATCGATA TAGAACATAA TTTTACTCCC GAATATATAA CGGTTAGAGG GCGAGCTAAA
ATTTTAAAAG AACTAAAAAA GGAAGCAAAA AAATCTTCGA GCGTTTTTCT TGCAAGTGAT
AATGATAGAG AAGGGGAGGC TATTGCCTTT CATTTACATG AAGCCTTGCT TCCGGAATGT
TCTTCTCCGA TAAAAAGAAT AGTTTTTAAC GAAATTACTC CCAATGCAAT CCAAGAAGCC
GTAAAAAATC CCATGGATAT AGACATGGGA AAGGTAAATG CTCAAAAATC CAGAAGAGTT
TTGGATAGAT TGGTCGGTTA TAACCTATCT CCGCTTCTTT GGCAAAAAGT AAAAAACGGA
TTGTCGGCAG GTCGTGTTCA ATCCGTTGCA TTGCGTTTAA TCTGTGAACG GGAAGAAGAG
GTTGAAAATT TTATTCCTGA TGAGTATTGG ACTCTTGACG GAGATTTTAA ATACAATAAA
ACTTCTTTTG AAGCTCAACT TGTAAAATAC AAGGATAATA AGCCTGAATT AAAAAATCAA
AAAGAGGTTG ATGCAATCAT CAAGGAGTTG AAGTCTTTAC CTGCTGTTGT AGATGATATT
AAGATAACGG AAAAAAGTAT AAAGCCTCGC CCTCCGTTTA CAACTTCTAC ATTGCAACAG
GTTGCCGCAA ACAGAATAGG CTTTACATCG AAAAAGACAA TGCAGGTAGC CCAGCAGCTG
TATGAAGGTG TTGCTGTCGG TTCTACCAGA GTCGGTTTGA TTACCTATAT GCGTACCGAT
TCGATAAGAA TTTCCGATAC GGCAATAGAG GCTGTCCGTA AATGGATTAA TGAAAATCAT
CCTAAAGAAT TGCCTGATGG GCCGAATGTA TACGCAGCAG GAAAAAAAGC ACAGGATGCA
CACGAGGCAA TTCGTCCTAC ATACATTGAG TATACTCCTT CTTATTTAAA AGAATTCTTA
ACCCGTGATC AGTTAAGACT TTATTCTTTG ATTTGGGAAC GTTTTGTTTC AAGTCAAATG
AAAAATGCAA AGACAAAAAC ATCGAGTTAT GAAATAAAGG TGGGGGATGC CGTTTTTCGT
GCAGCTTCTA CAAAGATAAC CGAAAAAGGT TTTTACACGG TTACAAAAAC ATTAATTTCA
AAAGATGAAA AAGGAACTTC TCTTCCGTCT ATGAAGGTGG GAGATGAAAT AAGTATTGAA
AGTTTAAGAC CTGAACAGCA TTTTACTCAA GGCCCTGCCC GTTATACGGA TGCAAGTATC
GTAAAAATGC TTGAAGAAAA AGGAATCGGA AGACCTTCAA CCTATGCGCC TATTATTTCC
GTTTTACTTG AACGCTATTA TGTAACAAGA TCTAATAAAC AGCTTGTTCC GACTCAGCTG
GGAAGAATTA TCAACAATCT TTTAGTCAAA AATTTTTCCG AAATAATAGA TGTAAACTTT
ACTGCCGGAA TGGAAAACCG CTTGGACGAA GTAGCTGAAA ATAAAATAGA ATGGCCTAAA
TTGATGGAAA GTTTTTACGG TTCATTTAAA GAAAAAGTAG ATACCGCTTT GGAAAATGTA
GAAAGCATTA AAGGTTCGTT GGATGAAGTT ACGGATATAG TCTGCGAAAA ATGCGGAAAC
AAAATGGTAA AAAAACTTGG CCGCTTCGGA GTGTTTTTGG CTTGCAGTGC TTTCCCTGAA
TGTAAAAATA CAAAATCGAT TCCTTTGGCA AAATGTCCGC GTGAAGGCTG CGGAGGAGAT
ATAATCGCAC GTAAATCCAA AAAGAGAGGA AAAGAATTTT ACGGATGTAC TCATTTTCCC
GAATGTGATT TTATTTCACA CTTTAAACCT ATCAATGCTT CTTGCCCGAA ATGCGGCTGG
TTTATGGTAG AAAAGTATGA TAAGAAAAAC GGAAACTATA AGGCTTGTAT TAATCCTAAT
TGCGATTATT TACACAGTGT AGTTGAAGGT GTAGAAGATG TGGAGGTGGA CAGAAGCAAT
GAATGA
 
Protein sequence
MENTMNETKK TKRTAKKTKQ HCLVIVESPA KAKTIEKYLG GDYIVRASMG HLIDLPKSRL 
AIDIEHNFTP EYITVRGRAK ILKELKKEAK KSSSVFLASD NDREGEAIAF HLHEALLPEC
SSPIKRIVFN EITPNAIQEA VKNPMDIDMG KVNAQKSRRV LDRLVGYNLS PLLWQKVKNG
LSAGRVQSVA LRLICEREEE VENFIPDEYW TLDGDFKYNK TSFEAQLVKY KDNKPELKNQ
KEVDAIIKEL KSLPAVVDDI KITEKSIKPR PPFTTSTLQQ VAANRIGFTS KKTMQVAQQL
YEGVAVGSTR VGLITYMRTD SIRISDTAIE AVRKWINENH PKELPDGPNV YAAGKKAQDA
HEAIRPTYIE YTPSYLKEFL TRDQLRLYSL IWERFVSSQM KNAKTKTSSY EIKVGDAVFR
AASTKITEKG FYTVTKTLIS KDEKGTSLPS MKVGDEISIE SLRPEQHFTQ GPARYTDASI
VKMLEEKGIG RPSTYAPIIS VLLERYYVTR SNKQLVPTQL GRIINNLLVK NFSEIIDVNF
TAGMENRLDE VAENKIEWPK LMESFYGSFK EKVDTALENV ESIKGSLDEV TDIVCEKCGN
KMVKKLGRFG VFLACSAFPE CKNTKSIPLA KCPREGCGGD IIARKSKKRG KEFYGCTHFP
ECDFISHFKP INASCPKCGW FMVEKYDKKN GNYKACINPN CDYLHSVVEG VEDVEVDRSN
E