Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1208 |
Symbol | topA |
ID | 2740102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 1240327 |
End bp | 1242492 |
Gene Length | 2166 bp |
Protein Length | 721 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637160086 |
Product | DNA topoisomerase I |
Protein accession | NP_971815 |
Protein GI | 42526717 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000400838 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAACA CGATGAATGA AACAAAAAAA ACTAAACGTA CTGCAAAAAA AACAAAACAG CATTGCTTGG TTATAGTCGA GTCCCCCGCA AAGGCTAAGA CAATCGAAAA ATATTTAGGA GGCGATTATA TCGTAAGAGC TTCTATGGGG CATTTGATAG ATTTGCCTAA ATCAAGATTG GCAATCGATA TAGAACATAA TTTTACTCCC GAATATATAA CGGTTAGAGG GCGAGCTAAA ATTTTAAAAG AACTAAAAAA GGAAGCAAAA AAATCTTCGA GCGTTTTTCT TGCAAGTGAT AATGATAGAG AAGGGGAGGC TATTGCCTTT CATTTACATG AAGCCTTGCT TCCGGAATGT TCTTCTCCGA TAAAAAGAAT AGTTTTTAAC GAAATTACTC CCAATGCAAT CCAAGAAGCC GTAAAAAATC CCATGGATAT AGACATGGGA AAGGTAAATG CTCAAAAATC CAGAAGAGTT TTGGATAGAT TGGTCGGTTA TAACCTATCT CCGCTTCTTT GGCAAAAAGT AAAAAACGGA TTGTCGGCAG GTCGTGTTCA ATCCGTTGCA TTGCGTTTAA TCTGTGAACG GGAAGAAGAG GTTGAAAATT TTATTCCTGA TGAGTATTGG ACTCTTGACG GAGATTTTAA ATACAATAAA ACTTCTTTTG AAGCTCAACT TGTAAAATAC AAGGATAATA AGCCTGAATT AAAAAATCAA AAAGAGGTTG ATGCAATCAT CAAGGAGTTG AAGTCTTTAC CTGCTGTTGT AGATGATATT AAGATAACGG AAAAAAGTAT AAAGCCTCGC CCTCCGTTTA CAACTTCTAC ATTGCAACAG GTTGCCGCAA ACAGAATAGG CTTTACATCG AAAAAGACAA TGCAGGTAGC CCAGCAGCTG TATGAAGGTG TTGCTGTCGG TTCTACCAGA GTCGGTTTGA TTACCTATAT GCGTACCGAT TCGATAAGAA TTTCCGATAC GGCAATAGAG GCTGTCCGTA AATGGATTAA TGAAAATCAT CCTAAAGAAT TGCCTGATGG GCCGAATGTA TACGCAGCAG GAAAAAAAGC ACAGGATGCA CACGAGGCAA TTCGTCCTAC ATACATTGAG TATACTCCTT CTTATTTAAA AGAATTCTTA ACCCGTGATC AGTTAAGACT TTATTCTTTG ATTTGGGAAC GTTTTGTTTC AAGTCAAATG AAAAATGCAA AGACAAAAAC ATCGAGTTAT GAAATAAAGG TGGGGGATGC CGTTTTTCGT GCAGCTTCTA CAAAGATAAC CGAAAAAGGT TTTTACACGG TTACAAAAAC ATTAATTTCA AAAGATGAAA AAGGAACTTC TCTTCCGTCT ATGAAGGTGG GAGATGAAAT AAGTATTGAA AGTTTAAGAC CTGAACAGCA TTTTACTCAA GGCCCTGCCC GTTATACGGA TGCAAGTATC GTAAAAATGC TTGAAGAAAA AGGAATCGGA AGACCTTCAA CCTATGCGCC TATTATTTCC GTTTTACTTG AACGCTATTA TGTAACAAGA TCTAATAAAC AGCTTGTTCC GACTCAGCTG GGAAGAATTA TCAACAATCT TTTAGTCAAA AATTTTTCCG AAATAATAGA TGTAAACTTT ACTGCCGGAA TGGAAAACCG CTTGGACGAA GTAGCTGAAA ATAAAATAGA ATGGCCTAAA TTGATGGAAA GTTTTTACGG TTCATTTAAA GAAAAAGTAG ATACCGCTTT GGAAAATGTA GAAAGCATTA AAGGTTCGTT GGATGAAGTT ACGGATATAG TCTGCGAAAA ATGCGGAAAC AAAATGGTAA AAAAACTTGG CCGCTTCGGA GTGTTTTTGG CTTGCAGTGC TTTCCCTGAA TGTAAAAATA CAAAATCGAT TCCTTTGGCA AAATGTCCGC GTGAAGGCTG CGGAGGAGAT ATAATCGCAC GTAAATCCAA AAAGAGAGGA AAAGAATTTT ACGGATGTAC TCATTTTCCC GAATGTGATT TTATTTCACA CTTTAAACCT ATCAATGCTT CTTGCCCGAA ATGCGGCTGG TTTATGGTAG AAAAGTATGA TAAGAAAAAC GGAAACTATA AGGCTTGTAT TAATCCTAAT TGCGATTATT TACACAGTGT AGTTGAAGGT GTAGAAGATG TGGAGGTGGA CAGAAGCAAT GAATGA
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Protein sequence | MENTMNETKK TKRTAKKTKQ HCLVIVESPA KAKTIEKYLG GDYIVRASMG HLIDLPKSRL AIDIEHNFTP EYITVRGRAK ILKELKKEAK KSSSVFLASD NDREGEAIAF HLHEALLPEC SSPIKRIVFN EITPNAIQEA VKNPMDIDMG KVNAQKSRRV LDRLVGYNLS PLLWQKVKNG LSAGRVQSVA LRLICEREEE VENFIPDEYW TLDGDFKYNK TSFEAQLVKY KDNKPELKNQ KEVDAIIKEL KSLPAVVDDI KITEKSIKPR PPFTTSTLQQ VAANRIGFTS KKTMQVAQQL YEGVAVGSTR VGLITYMRTD SIRISDTAIE AVRKWINENH PKELPDGPNV YAAGKKAQDA HEAIRPTYIE YTPSYLKEFL TRDQLRLYSL IWERFVSSQM KNAKTKTSSY EIKVGDAVFR AASTKITEKG FYTVTKTLIS KDEKGTSLPS MKVGDEISIE SLRPEQHFTQ GPARYTDASI VKMLEEKGIG RPSTYAPIIS VLLERYYVTR SNKQLVPTQL GRIINNLLVK NFSEIIDVNF TAGMENRLDE VAENKIEWPK LMESFYGSFK EKVDTALENV ESIKGSLDEV TDIVCEKCGN KMVKKLGRFG VFLACSAFPE CKNTKSIPLA KCPREGCGGD IIARKSKKRG KEFYGCTHFP ECDFISHFKP INASCPKCGW FMVEKYDKKN GNYKACINPN CDYLHSVVEG VEDVEVDRSN E
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