Gene TDE1070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1070 
Symbol 
ID2740831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1097790 
End bp1098815 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content37% 
IMG OID637159944 
Productoligopeptide/dipeptide ABC transporter, permease protein 
Protein accessionNP_971678 
Protein GI42526580 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAATA ATAATGTAAG CGGTTCAAAA TCGCTGTTTG AAATCCTTTT TCCATATGTC 
CGGTATATAT TCAAGCGTTT AGTATCGATA ATTCCGGTAT TAATAATCAT GTCGGTTGCG 
ATATTTATAC TTATCAACCT GATGCCGGGA GATCCCATAT TGGCAATGCT TGATCCCGAA 
AAGACCAAGG CTATGACGCC GGAAGAAAGA GCCCTATATA TTGAAAACAT GAGAAAATTT 
TTAGGATACG ATAAGGGCCC TGTAGAAAGA TATTTTTTAT GGATGGGCGA TACTTTTCGA 
GGAGAATTCG GTTATTCGAT AAAATACAAT AAACCCGTAA ATGAGTTTAT AGGAACATAT 
ATAAAACGGT CTTTTAGAAT AAATATTTGG GGCTTTCTTC TAGCCTTTTT AATTTCGATT 
CCGGTAGGAA TCACGGCAGC AGTAAAAAAG AACAGTTTTT TTGATAAAAC AGTAACGGTT 
CTAACAATAG TGGGTATATC CCTACCCTCT TTCTTTTTGG CACTGCTTTT AATAATGGTA 
TTCGTTATAT TTATGCAAAT TTTACCCTTT TCAGGTATGT CGGATCCTAG AGGCATCCTA 
CCTGACTGGC ATTATATCAT ATTACCGGTT ACCGTAGTAG TTCTTACATC CCTTGTAGGA 
CTTATACGCT ATGTACGATC AGCAATGATT GAAATATTAA AATCAGATTA CATCAGGACG 
GCAAGAGCAA AGGGGCTTTC AGAAAAGGTA GTTATATACA GACATGCCTT TCAAAATGCT 
TTGATACCGG TTGTTACCCT TATCGGTTTA TATATACCCG GCCTTTTCGG CGGTTCTATA 
GTTGTCGAAA AAATATTTGC TTATCCCGGA ATGGGATTAC TGATGAATTA TGCATACGGC 
TTTAAGGACA GGGCAGTATT ACAAACTGTT CTCTTATTCT TTGGACTTCT TACCCTATTG 
GGTAATATCT TCATAGATGT AGGATATATG GTCGTAGATC CGAGGATTCG GGAAGGAAAG 
GTTTAA
 
Protein sequence
MANNNVSGSK SLFEILFPYV RYIFKRLVSI IPVLIIMSVA IFILINLMPG DPILAMLDPE 
KTKAMTPEER ALYIENMRKF LGYDKGPVER YFLWMGDTFR GEFGYSIKYN KPVNEFIGTY 
IKRSFRINIW GFLLAFLISI PVGITAAVKK NSFFDKTVTV LTIVGISLPS FFLALLLIMV 
FVIFMQILPF SGMSDPRGIL PDWHYIILPV TVVVLTSLVG LIRYVRSAMI EILKSDYIRT 
ARAKGLSEKV VIYRHAFQNA LIPVVTLIGL YIPGLFGGSI VVEKIFAYPG MGLLMNYAYG 
FKDRAVLQTV LLFFGLLTLL GNIFIDVGYM VVDPRIREGK V