Gene TDE1069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1069 
Symbol 
ID2740830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1096773 
End bp1097789 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content41% 
IMG OID637159943 
Productoligopeptide/dipeptide ABC transporter, permease protein 
Protein accessionNP_971677 
Protein GI42526579 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCAAG AAGAAAACAA AAATTTCAGT GAAAAAGACG AAGTTATTCT ATCCCCGGCA 
CAGCAGATAA GAATTAAATT TAGAAACAAC AGACTGGCTA TGATGGGCTT TTATATGTTC 
GTTACAATAG TCCTTCTTGT TGTAGTAACT CATTTCTATA CCAAATTCAC AGGCTACGAT 
TTTGCAAAAA CAGATCCTAC AATAAAAAAT AATCCGCCGT CTTGGATACA CCCATTCGGA 
ACGGACAAGT ACGGACGGGA CACCTTCATG AGAGTTCTCG AAGGAGGATG GATTTCTTTA 
CAGGTAGGCT TTTTATCTAC ATTTATGGCC GTAACCATAG GTTTAACTAT GGGTTCGGTT 
GCAGGATTTT TCGGCGGCAG GGTTGATAAT ATTATTATGA GGTTAATAGA AATACTTTCC 
TCATTCCCCT TCTTGGCCAT AGCTTATACA CTATCAGCCA TATTTAGGGA AAGGCCGCCC 
GAATTCAGGC TCTATGTAAT AGTTATAATA CTGGGACTTT TAAGCTGGAC AGGCTTAGCC 
CGATTGATAC GGGGGCAAAT TTTAGCTTTA AGGGAACAGG AATTTATTGT GGCAACGAGG 
GCCTTAGGGA TAAAAAGGCG TAACCAGATT TTCAGACATT TGGTACCCAA CGTATTAGCG 
ACTGTTGTAG TATCTGCAAC CCTCACCTTT GCATCATCTA TTTTGAGTGA AGCATTCTTG 
TCATTCTTAA ACTTGTCGGT AACCGAACCG ATTCCGACAT GGGGTGCTCT TTTATCGAAG 
GCCTCAGAAA ACAGCACAAG CCTTAGAACC TTTTGGTGGA TTTGGATATT CCCCGGTGCA 
ATGCTCTTTT TCTTTATTAT GAGTATCAAC CTCATCGGTG AAGGTCTTAG AGACTCTATT 
GACCCGAAGG CCGAATATAC AACAAAGGCA CAAAGAAAAG AGGCTAGAGC CCGACGAAAA 
GAAGAAAAAA GACTTGCAAA ACAGGCTAAG CAAACAGTAA AGGAGGCGGC TGTATGA
 
Protein sequence
MAQEENKNFS EKDEVILSPA QQIRIKFRNN RLAMMGFYMF VTIVLLVVVT HFYTKFTGYD 
FAKTDPTIKN NPPSWIHPFG TDKYGRDTFM RVLEGGWISL QVGFLSTFMA VTIGLTMGSV 
AGFFGGRVDN IIMRLIEILS SFPFLAIAYT LSAIFRERPP EFRLYVIVII LGLLSWTGLA 
RLIRGQILAL REQEFIVATR ALGIKRRNQI FRHLVPNVLA TVVVSATLTF ASSILSEAFL 
SFLNLSVTEP IPTWGALLSK ASENSTSLRT FWWIWIFPGA MLFFFIMSIN LIGEGLRDSI 
DPKAEYTTKA QRKEARARRK EEKRLAKQAK QTVKEAAV