| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0875 |
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| Symbol | rluB |
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| ID | 2740922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 897629 |
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| End bp | 898333 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637159749 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | NP_971485 |
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| Protein GI | 42526387 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000212834 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATAGACG AAATAAGACT TCAAGTTTAT TTAGCCCGCT GCGGAGTAGC TTCACGCAGA
GCCTCTGAAA ATCTCATCTT AAACGGAAGA GTAAGCGTTG ACGGCAAAAT AATAACCGAA
CTCGGTATAA AAGTTTCGGG TAAAGAAAAA ATCTGTCTTG ACGGAAAACA AATTTTCCCC
GAGGCCGAAA AACGGTATAT TCTATTGAAT AAACCTGAAG GCTATGTTTG CTCATTGGCC
GATGAAAAAG ATAGACCCAT CGCCGCCTCT CTTTTAAAAG ATACCTATAC CGAAAGGCTT
TACAATATAG GCCGCTTGGA TATGCTTTCC GGCGGAGCCA TTCTTTTTAC AAATGACGGA
GATTTTTCTG CAAAGGTTGA GCATCCTTCT TCCGAAATCG AAAAAGAATA TGAGGTAATA
ACCGTCTTTG AATACCCAGA TGAAATCCTC CAAAAATTTT TAAGAGGGGT GCGTATCGAA
GGCGTTTTTT ATAAGGCTCT TTCGGCAGAA CGCATATCCA AAAACAAAAT GCGCATCGTT
TTAATTGAAG GTAAAAATCG AGAAATCCGC CGAGTCTTAA AATTCTTCAA TATAAAAATA
AAAAAACTGA CACGGGTCAG AATAGGCTGT GTGTATCTGG CAGACCTCCC CTCCGGCAAA
CACCGCCCCT TAACTTCTGA AGAGATTAAG GGTCTATTGG GGTAG
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| Protein sequence | MIDEIRLQVY LARCGVASRR ASENLILNGR VSVDGKIITE LGIKVSGKEK ICLDGKQIFP
EAEKRYILLN KPEGYVCSLA DEKDRPIAAS LLKDTYTERL YNIGRLDMLS GGAILFTNDG
DFSAKVEHPS SEIEKEYEVI TVFEYPDEIL QKFLRGVRIE GVFYKALSAE RISKNKMRIV
LIEGKNREIR RVLKFFNIKI KKLTRVRIGC VYLADLPSGK HRPLTSEEIK GLLG
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