Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0779 |
Symbol | rplE |
ID | 2740657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 811941 |
End bp | 812492 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637159652 |
Product | 50S ribosomal protein L5 |
Protein accession | NP_971389 |
Protein GI | 42526291 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000663663 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATT ACGTACCTCG GCTTAAGAAA GTCTATACAG AACAAATCAT GCCCGAGCTT AAAAAGGAAT TTAACTACAG TTCCGTTATG CAAATTCCTC GGCTTAAAAA AGTCGTAGTA AGCATGGGCG TTGGTGTAGC TCTCACGAAT AGGAAACTAC TTGATGCTGC AGTAACTGAC CTTGAAACAA TCACCGGTCA AAAAGCTGTG AAAACAAAGG CAAGAAAGAG TATAGCAAAC TTTAAACTTC GTGAGGGAAA TGAGATTGGG GCAATGGTAA CTTTGCGCGG TGCTAGAATG TATGAATTCT TAGACCGCTT TATCAATGTT GCTTTGCCGC GTGTTAAGGA TTTCCGCGGA GTTAACCCGA ACGGTTTTGA CGGTCGCGGA AACTATTCAG TGGGTATTAC CGAGCAGATC ATCTTCCCCG AAATCGACTT CGATAAAATC GAACGAATTT CAGGATTGAA TGTGAACGTA GTAACTTCTG CCGAGACTGA TCAAGAGGCA AGATCGCTTC TTGCAAAGTT TGGTATGCCC TTTAGGAAGT AA
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Protein sequence | MSNYVPRLKK VYTEQIMPEL KKEFNYSSVM QIPRLKKVVV SMGVGVALTN RKLLDAAVTD LETITGQKAV KTKARKSIAN FKLREGNEIG AMVTLRGARM YEFLDRFINV ALPRVKDFRG VNPNGFDGRG NYSVGITEQI IFPEIDFDKI ERISGLNVNV VTSAETDQEA RSLLAKFGMP FRK
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