| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0681 |
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| Symbol | secD |
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| ID | 2740240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 718946 |
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| End bp | 720709 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637159557 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | NP_971294 |
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| Protein GI | 42526196 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA GATTTAGGTT TATCGTTGTT CTTCTTGTCA TCGCCTTGTG CTTTGTTTTC
TTACACCCTA CCCTTAAATG GTATTTTTGG ACAAATCAAG AAGATAAGGC ATTAGCCTTG
GCATCAAGAG AAAAGATTAA AGATTATTCC GAAAACATGG CAAGAGCTGA TGTTGATAAG
CTTATAGAAA TGGCTGCTTC GAACTCAACA GAGCCTCTTT CGGAAAAATA TGCCCCTATT
ATTAAAGAAG CTAAGAACCG TAGAAAGGCC TTAGGTATGG AAATCCCTTA TCAATGGACG
GCTCAAGATG TTGCTGCAAG CTTTAAGCTT TCATCAAAAG AAAAGTTTAT ACCTATAGCC
CAGTCTATTT TAGAAACTGC GTATAGGGAT TCCATTTTAG GCATAAAAAA CTATCAAACA
AATGCCGTTA AACTGGGTCT TGACTTATCG GGCGGTATGT TGGTTATTAT CAAAGCCGAC
TTGGATGCTG CAATTTCTGC CGATGGAGCA AGCAGCGATA CAATAGCCGA CTCAAAGAAG
GCTGCCATGA CTTTGGCCAT GGACACCCTC CGAAGCCGAA TAGATAAATT CGGTCTTACA
GACCCTGTAA TTAGACGCCA AGGCGATGAT AGAATCTACA TTGAAATGCC GGGCGCTGCC
GATGCAGATA AGATAAACTC CATTATCATG GGCCGAGGTA TTTTAGCCTT CCATATAGTG
GATGATGAGG CGACTCAGGC ATTTAGAGAA TATTACCGAA ACAATCCGGG AAAAACCTTT
GATGCCGATT ACAATCTTTT AAACCCCGAA ATTATTCCTG AAGACTGTAT GGTGCTGGGT
GTATATCACA AGGATGCCTA CGGTATAGAT GAAAGAGACG ATAGAGAACC CTTCCTTGTC
GTAAAAAAGC AGGCAGGCCT TGAAGGAAAA CACCTCGTAA GTGTTGACAC TTCGACAGAT
CAAAGATCCA ATAACCCCCT CGTAAACTTT TCTCTTGATG CTGAAGGAGC AAAGATATTT
GCAGAATTAA CTACAAACAA TGTCGGAAAA AGGCTTGCCA TAGTTTCGGA CAACAAGATA
AAGTCCGCTC CTAACCTCAA AGAGCCTATC ACCGGAGGTT CGGGAAGCAT AAGCGGAATG
TCTGCAACAG AGGCAAACAA CCTTAAAACC GTTTTACGGA CTGCATGGCT AAATGTTCCT
CTCCAGCTTG AAACACAGCA GGTTGTAGGA GCCAGCTTAG GAGACGAAAA AATTAATGAA
GGTATTAAAG CCTTGCAATG GGGCTTAATT GCAGTTTTGG TTTTTATGCT TGTATTCTAT
AAGGAAGCAG GAATCAATGC CTGTATTGCT CAAATTTTAA ACCTTTATAT CATGTTCAGT
ATTCTTTCAG CCTTCAACTT AACTCTTACC TTGCCCAGTA TTGCGGGTAT GATTTTAACC
ATAGGTATGG CTGTAGATGC TAACGTTGTT GTCTTTGAAA GAATAAAAGA GGAACTAAGA
CTTGGTAAAA CAAGGGAAGC CTCCATAAAC GCAGGCTTTG AACATGCCTT TTCTGCAATT
ATGGACTCAA ACATTACAAC ATTCATTGCA GCCTTCTTTT TATCAATTCT CGGCACCGGA
CCGATAAAGG GCTTTGCATA CAGTTTAGCC ATAGGTGTTG TTTCTTCAGT ATTTACCGCT
TTGTTTGTTT CAAGATTAAT TTTTGACTTT GGAACTCAAA CATTAAAATT GGAGAAGATT
CATATCAGCT GGAGGAAGTT ATAA
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| Protein sequence | MSKRFRFIVV LLVIALCFVF LHPTLKWYFW TNQEDKALAL ASREKIKDYS ENMARADVDK
LIEMAASNST EPLSEKYAPI IKEAKNRRKA LGMEIPYQWT AQDVAASFKL SSKEKFIPIA
QSILETAYRD SILGIKNYQT NAVKLGLDLS GGMLVIIKAD LDAAISADGA SSDTIADSKK
AAMTLAMDTL RSRIDKFGLT DPVIRRQGDD RIYIEMPGAA DADKINSIIM GRGILAFHIV
DDEATQAFRE YYRNNPGKTF DADYNLLNPE IIPEDCMVLG VYHKDAYGID ERDDREPFLV
VKKQAGLEGK HLVSVDTSTD QRSNNPLVNF SLDAEGAKIF AELTTNNVGK RLAIVSDNKI
KSAPNLKEPI TGGSGSISGM SATEANNLKT VLRTAWLNVP LQLETQQVVG ASLGDEKINE
GIKALQWGLI AVLVFMLVFY KEAGINACIA QILNLYIMFS ILSAFNLTLT LPSIAGMILT
IGMAVDANVV VFERIKEELR LGKTREASIN AGFEHAFSAI MDSNITTFIA AFFLSILGTG
PIKGFAYSLA IGVVSSVFTA LFVSRLIFDF GTQTLKLEKI HISWRKL
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