| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0315 |
|---|
| Symbol | |
|---|
| ID | 2740514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 347078 |
|---|
| End bp | 348862 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637159187 |
|---|
| Product | ABC transporter ATP-binding protein/peptidase |
|---|
| Protein accession | NP_970929 |
|---|
| Protein GI | 42525831 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0532583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGG GTGCATTGTA TTATTTTGTT ATGTGTTGGA GGTATGACAA ACGTTTTCCG
GTTGTCATTT TATTAAAAGA AATTTTAAAT GCCGTAAAAA CTGTAATGGC GGTGGTGCTG
CCTAAGTTCA TTATCGATGC TTTGTTTACA ACACAAAATA AAGAAGAAGC TGTTAGGTTT
TTACTCATAT ATGCCGGAAC CTTATTTGCA ATAAGTCTTA TAACTGCAGT TTTAAACCGT
GCTACAATTA TTTTAAAAAG CATCTCCTTT CAGCGATTTC AAGCCGATAT AGGAAAAAAA
TTAATGCAGA TAGATTATGA ACGGCTTGAA ACTCCCGAAT TCTTAAACTT AAAACAAAAG
GCGGATCAAT ATGCATATTC AGGCGGTTAC GGATTTGCCG TAATCTTAGA AGACTCCGTC
GGTTTATTCG GTAAACTGCT CACTTTTGCA GGTCTTATCT CCGTTATCGC AATCTTAAGC
CCATGGCTTG TACTTGCAGT CATTATAATT GTCGCTCTTA ATTCTTTGGT CTTTGCAAAA
ACAAATAAAC ATGGGATAAA ATACCGCATG GAACAATCCG TGCAGGAAAG GCGTATCGGC
TACTATTCTA AAAAAATGGA AGATTTTCAA TACGGAAAAG AAATCCGTAC TTATAATTTA
GCTCCGTGGT TTTTAGAAAA ATACAATCAG CAAATTAAAG TGCTCGGAAA ATTTTATAAT
AACATAGCCA ATACCCGTTT TATAAGCGGC GCCTTTAATT CTTTTACCTT TGCCGTTCAA
TTAATCATAA GCTATTTTTT TGTAATTAAG CAAACATTAG ACTCCACTCT TTCGGTAGGA
AATTTTACAA TGTATCTTGC AGCAGTAAGT TCGTTCGCTT CAATACTATC CGAAATTATA
AAAACCGTAG TTCAGCTTTC GCAGTTCAAC ACTTATTTTG AAGCTTTTAA AGAATACATT
AATATGCCGT CTATGGAAAA TACAAAAGGC GGAAAGCCTA TTTTACCTGA AAACTTTGAC
ATTGAATTTC AAAATGTTTC TTTCAAATAC GGCACAAGCG AAAAGTTTGC CTTACAAAAT
GTAAACGTTA AATTTAATTC CAAAGAGCGT ATAGCCATAA TAGGAGAAAA CGGTGCAGGT
AAATCAACCT TTGTAAAACT TTTAATGCGC CTATACGAGC CTACCGAAGG CAAAATTTTG
ATTAACGGTA TCGACATAAA AGAAATAGAC TATAACCATT ATCAAACTTG GTTTGCCGCA
GTCTTCCAAG ATTTTAAACT TTTTTCTTTT AGCATAAAAG AAAATATTAC CTTCGGCAAT
GATAAAACCG AAGAAGACAA AAAGCGTTTG GAAAATATTG TTTCGGCATC GGGCTTAAAA
GAAGTTACCG ATAAATTGGA TAAGGGCTTG GAAACCTTGG TGTACCGAGA CTTTGACGAT
GCAGGTTTTA CGCCCTCAGG CGGAGAAGGC CAAAAAATTG CAATAGCCAG AGCCGCATAT
AAAAACGCTC CGATAGTTAT TTTAGACGAA CCGACAGCAG CCCTCGACCC AAAAGCCGAA
AATAAAATCT ATGAGCAGTT TGATTCTTTC TTTGCGGATA AGTGTTCTCT TTATATTTCG
CATAGAATGG CGGTTACAAA ATTTTCGGAT AGGACTCTTG TATTCGACAA TGCACAGATT
GTCCAAGACG GAAACCACGA AAGTCTTATA AACCAAGAAG GAAAATACAA GGAGCTCTAC
AGCTTGCAGG CTAAGTATTA TACGGATGAG GTCAATAGTC AATGA
|
|---|
| Protein sequence | MFKGALYYFV MCWRYDKRFP VVILLKEILN AVKTVMAVVL PKFIIDALFT TQNKEEAVRF
LLIYAGTLFA ISLITAVLNR ATIILKSISF QRFQADIGKK LMQIDYERLE TPEFLNLKQK
ADQYAYSGGY GFAVILEDSV GLFGKLLTFA GLISVIAILS PWLVLAVIII VALNSLVFAK
TNKHGIKYRM EQSVQERRIG YYSKKMEDFQ YGKEIRTYNL APWFLEKYNQ QIKVLGKFYN
NIANTRFISG AFNSFTFAVQ LIISYFFVIK QTLDSTLSVG NFTMYLAAVS SFASILSEII
KTVVQLSQFN TYFEAFKEYI NMPSMENTKG GKPILPENFD IEFQNVSFKY GTSEKFALQN
VNVKFNSKER IAIIGENGAG KSTFVKLLMR LYEPTEGKIL INGIDIKEID YNHYQTWFAA
VFQDFKLFSF SIKENITFGN DKTEEDKKRL ENIVSASGLK EVTDKLDKGL ETLVYRDFDD
AGFTPSGGEG QKIAIARAAY KNAPIVILDE PTAALDPKAE NKIYEQFDSF FADKCSLYIS
HRMAVTKFSD RTLVFDNAQI VQDGNHESLI NQEGKYKELY SLQAKYYTDE VNSQ
|
|---|
| |