Gene TDE0068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0068 
Symbol 
ID2741683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp75437 
End bp76672 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content42% 
IMG OID637158938 
Productdiaminopimelate aminotransferase 
Protein accessionNP_970685 
Protein GI42525587 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACCT TTAAAAAAAT TACCGATTTT ATTGAATCCA AAACAAACGA TATTATAGGA 
TTGGAAAGGC TTTTAACTTC CATTCCTGCC ATGGCTCCGG AATCCGATGG AGACGGAGAA
TTAAAAAAAT GTGAAGCCCT GGAAAAATAT TTAAAAGAAG CGGGTTTTAG CAATTTTGAA
CGCTTAGATG CCCCAGATGA GAGGGTTTCT TCAAAAATAC GCCCTAATCT GATTGTCACC
ATTCCCGGAA AAAACGATAA GGAAAGGCTC TGGATTATGA GCCATCTGGA TGTAGTTCCG
CCCGGAGACC TGTCTAAGTG GGAAAGCGAT CCTTGGACTG TAATCGAAAA GGACGGAAAA
CTTATAGGCC GCGGAGTTGA AGACAACCAG CAGGGCCTTG TTTCTTCGGT TTTTGCAGCC
TTGGCTTTTA TCAAATTAGG AATCACCCCC GAACATACTA TCAAGCTTTT ATTTGTGGCC
GATGAAGAAG TCGGCTCCCA ATACGGCATA ATTTACCTCC TCAATAAGCA CAATCTTTTT
ACAAACGATG ATTTGATTCT TGTACCAGAT GGAGGCGACC CTAAGGGAGA AACGATAGAA
ATAGCCGAAA AAACCGGCCT TTGGCTAAAG GTTATTACGA AGGGCGTCCA AACCCATGCT
TCAATGCCTA ACACGGGCAA AAACGCCTTT GTTGCAGCCT GCGACCTTGC CCTCCGCTTA
AACGACTTAG AAAATCATTT TAACAAAAAA GACGATTTAT TTTCGCCTAA TTATTCAACC
TTTCAGCCGA CTAAAAAAGA AGCCAATGTA CCGAATGTAA ACACAATTCC GGGAGACGAT
GTTTTTTATG TAGACTGCCG AATTCTTCCT TCTTACGATG TAAACGAAGT CCTAAAAGAA
ATGCAAAAAA GAGCTTCAGA GGTTGAAAAA AAGTATGGAG TGGGTATCAG ATTTGAATAT
GATGAACCTG AGGCCTCTCC TGCAACACCT AAGGATGCGA AGATTGTAAG CCTTCTTTCA
TCTGCCGTAA AAAAGGTAAA AGGAATTGAA ACCTCTACGA TAGGAATAGG AGGCGGAACG
GTCGCTGCCT GTCTGCGCTC TAAGGGCTTT AATGCCGTTG TTTGGAGCTC CCTTGATGAC
AGCTGCCACC AGCCCAACGA ATATGCTTTT ATAAAGAATA TCATAAGCGA TGCAAAGGTT
ATGGCAGCTA TGATGTTCGG TGTCGAAAAT ATTTAA
 
Protein sequence
MSTFKKITDF IESKTNDIIG LERLLTSIPA MAPESDGDGE LKKCEALEKY LKEAGFSNFE 
RLDAPDERVS SKIRPNLIVT IPGKNDKERL WIMSHLDVVP PGDLSKWESD PWTVIEKDGK
LIGRGVEDNQ QGLVSSVFAA LAFIKLGITP EHTIKLLFVA DEEVGSQYGI IYLLNKHNLF
TNDDLILVPD GGDPKGETIE IAEKTGLWLK VITKGVQTHA SMPNTGKNAF VAACDLALRL
NDLENHFNKK DDLFSPNYST FQPTKKEANV PNVNTIPGDD VFYVDCRILP SYDVNEVLKE
MQKRASEVEK KYGVGIRFEY DEPEASPATP KDAKIVSLLS SAVKKVKGIE TSTIGIGGGT
VAACLRSKGF NAVVWSSLDD SCHQPNEYAF IKNIISDAKV MAAMMFGVEN I