Gene TDE0043 details

Gene Information

• Locus tag: TDE0043
• ID: 2741658
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 49828
• End bp: 51711
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637158913
• Product: TPR domain-containing protein
• Protein accession: NP_970660
• Protein GI: 42525562
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAGT CTGTAAATGC GCTTATAAAT GAAGCTATTG AAGCCGGAAA AAAACGCGAC 
TATAAGACTT CAATTTTAAT TTTAGAAAAC TTAGCCGCAG AGGGCTTAGC CGAAGTATCT 
TCTCCCTTTT ACGGCGAAAA AAAGGGAAAT CCCGAAATAT ATTTATACCT TTCAAGGGCT 
TGGGCTGCTG TAAACAATTA CGGCAGATCA ATAGCCTATG GTAAGGCCTA TATAAAAAGA 
TGCTCATCGG ACCCGTCTGC AAATAGTACA GACCTTCCTA TGGGTTTCTT TTTTTTGGGC 
CGCTCATATT TGGCCGCAGG GCAATATGAC AGGGCCGTTT ATTGTCTTGA AAAAAGCTTA 
AAGCTAAATC CCCATCCTCT TGAAACAAGG GCAATGCTCG GCTCGGCCTA TCTAAAATGG 
AAAAAGCCCC GTCTTGCCAG GGAAACCTTT GAAGAAGCCT TAAAGTTTGC TCCTTCGGAT 
GCAAAGCTGA ATGCCGGATA TTTAAATTCT CTTTTTGTTG AAGGAATTTA TGAATTAAGA 
AACGGCAACG CAGATATGGC TCGCCAAATG TTCAGCTTTG CAATAAAGAA CGGCATAGAC 
GGGGTTGCTC CTCGCCTATA TCTTGCTCAC GCCCTAAAAA TGGAGGGCTA TCTTCCGGAG 
GCCCTAGGCC AATACGAGGC CGCCTGCGAA TTCGAGCCCG ATGATCCCGC CCTAAAGTGG 
TACCCTGCAA TGATCAAGAT GCAGCTGGGC GATACAACCG CTGCTGCAGA AGATTTTGCA 
AAACTGGGTA TTGAGATTCC CGATGACGGA GTTTCGGATC GTTTTTTTGC AATGGGCGTT 
ATCAAAAAAC ATATGGAGCG GGGCGATTAC TCAAGAGCAG CCGTTGCCGC CCGCATCTTT 
ATTAAAACCT TTGGAAGCGA TGCCGAAATA CGCCTCCTCG CTGCAGAAGC CCAGCGTTCC 
ATGGGGAACA CCAACACAGC CTTGGGACAT TATAAGTGTG CACTTGAACA CGAGCCTGAA 
AATCCTTATC CGCATTACGG CATAATGCTT GCCCTTCAAG AAGCATACCG ATGGGAGGAA 
CTTAGTGCCG AAATCCTGCG GGCCGAAGCA AGCGGCGTCT GCGATGCGGA CGATATTTAT 
TATTATAAAA TAATTACCGC TGCCCATATC GATAATCCTC CCGAAGAGGT ATTGCCTCAT 
CTTCAAGCTC TTATTCAAAA CGGAAGATCC GATTCGGCTA TTTTTAATGC GATGGGCTGC 
TGCTACATAA AACTGAACAT GCCCGACCTT GCCCTAAACT GGTATGAAAG AGCTTTGAGC 
ATCAATGAAA AAGATGAAGA AGCTAAAATA GGAATTATCG CCTCTTACGA AAATTTACAA 
TTAAATAAGG AAGCTGATGA AGCATATAAC TCATATCTAA ATGAATGGGG AAAGAATATC 
TACATAAGGC GGGACTATGT ACTATTTTTA GAAAAATGCG AGCGTTGGGA AGATGCCGGC 
AATCAGCTTG AAATTTTAAT GAGTCAAGGC AAAAAAGTTA ATTTTGATCC TGAGCTTGCT 
TTATTCCGAA GAAAGGCAGG ACAATACCAA AAAGCCGCTA TTCTTTATAG AAAGATGCTT 
AGGGCTAAAC CGGAAGAAAG ACTCTTATTA CACAACCTCG TCTTCTGTCT TGATAAAATG 
GGACAAACAA AAGTCTCCCT CGATCTTTTA AAAGCTGCAG AAAAAATGTT CGGCATTAAG 
ACCGATTCCA TGCTCATCAA AGGCATCCTT CAAATGCGCC TAAAAAAGAA AGAAGATGCA 
ATAAAAACTT TTCAATACAT ATTGGAAAAA GAACCTAAAA ACAAACATGC TGCCGAATTC 
TTGGAAAAAG CTTACGGAAA ATAA 

 

Protein sequence

MAKSVNALIN EAIEAGKKRD YKTSILILEN LAAEGLAEVS SPFYGEKKGN PEIYLYLSRA 
WAAVNNYGRS IAYGKAYIKR CSSDPSANST DLPMGFFFLG RSYLAAGQYD RAVYCLEKSL 
KLNPHPLETR AMLGSAYLKW KKPRLARETF EEALKFAPSD AKLNAGYLNS LFVEGIYELR 
NGNADMARQM FSFAIKNGID GVAPRLYLAH ALKMEGYLPE ALGQYEAACE FEPDDPALKW 
YPAMIKMQLG DTTAAAEDFA KLGIEIPDDG VSDRFFAMGV IKKHMERGDY SRAAVAARIF 
IKTFGSDAEI RLLAAEAQRS MGNTNTALGH YKCALEHEPE NPYPHYGIML ALQEAYRWEE 
LSAEILRAEA SGVCDADDIY YYKIITAAHI DNPPEEVLPH LQALIQNGRS DSAIFNAMGC 
CYIKLNMPDL ALNWYERALS INEKDEEAKI GIIASYENLQ LNKEADEAYN SYLNEWGKNI 
YIRRDYVLFL EKCERWEDAG NQLEILMSQG KKVNFDPELA LFRRKAGQYQ KAAILYRKML 
RAKPEERLLL HNLVFCLDKM GQTKVSLDLL KAAEKMFGIK TDSMLIKGIL QMRLKKKEDA 
IKTFQYILEK EPKNKHAAEF LEKAYGK