| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0006 |
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| Symbol | |
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| ID | 2741621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 6200 |
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| End bp | 9784 |
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| Gene Length | 3585 bp |
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| Protein Length | 1194 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637158875 |
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| Product | Snf2 family protein |
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| Protein accession | NP_970623 |
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| Protein GI | 42525525 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[S] Function unknown |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family
[COG4279] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGAC AGACTTACGG GACGACACCT TGGGGTGCAT GGTTTTTGGA TATGCTGAAG
GCCTATGATG ATTCAGGCCG ATTGTCCAGA GGAAAAACTT ATGCAAACAC AGGGAAGGTA
AATTCTCTTG TGGTAAACGG GCAAACGGCG GGAGCAAAGG TTAAGGGGAA CTATTCTCCT
TGGTACCATG TGTATTTTAA ATTCCCGCCC CTTTCAAAAA CAAATAAAAC CGCAATCCGC
TCAATCTTAG AAAAACATCC GATTGAACTC GCAGGCCTTA GGGCGGGAAT TATGAGCCCG
GCCCTCATCG AAGCCTTAAA GAAAAAGAAA GTGAGGCTCA TTCCTGCCCG CTGGAATTTA
ATCGAAAGGG ACTGCACCTG CCCCGATTCG GGAGACCCTT GCAAGCACAT GGCGGCCGTT
CTTTTTTTAC TTGCCAAAGA AATAGACCAT GACCCTCGCC TCTTGTTTAA GCTTGCGGGC
TTTGACATCG ATTCTATAAA TGTACCGGAA ACCGAAGTTT TCGAAAAAGG AGGAACACAA
AAACTTGGGC TCCTCCAAGA GCAGCCCGTT CCGTTGAGCC TCCGTAAAAA TGAAACCTTA
AATAAAGCAG CAGACTTATC TTCAGACTCA TCAGTCAGTG AGACCGCTCA TAATTCTTGT
GAACTGCAGA GTCCTTTAAA ATTTTCCCTT GGAGAATCCT ATCTTCCGCT GATAACAAAT
ATTCTTCCTC CTGAACCTAA TTTTTCATCA AGCGATTTTA TAATAAAGCT GACGGAATTC
TATCATAAGG CGGTTTTAAA TTACGGGCTC AATTTTTACG GACAAGAAAA GCAAAGCGAA
AAACAAGAAG AAAAATCGGT AAACCCTTTT TTGTTTGCGA GGGTAAAAGT AAATATCGAC
AATATCCGAA AACAAAAAAG AGCCTTCCCC CTTGAGCCTA AAAGCCCTCT AACGGTAAAT
ATAAAATTAG GCGAAACCCA CGAAATAAAT CAAACTCTTT TGCAAGCTCA AAATTTTTAT
AAAACAAGAA ACAGCTTAAA TGAGATGAGC CCATCGGTTA AAATTCTTTT TTCTCTCTTT
GCTCTTGCAG GGAAATTGAT TCAAAGCTCC GCATTTATAC CCGCCGTATT TACCGAAAAC
AAAAAGCTTT TTATCTTTTG GAAAAGCCTT TCGGCTTCTT CCGAAATAAA GGCCGACATT
TTTAAATTTG CAGCTTCCCT CACAAAGGAC TTTTTTCTTC CGGTTGGAAA ATGGGGAAGG
CTCTACTGTG CAGAGCTTTT GCTTACAGCT CTTTTAACCG AATATGCGGC ATCTTTAAAA
TTCTTTCCTA ACAAGTCCTA TACTAAAGAT AAAGAAATAG ATAAGCTCTT TTTTTTAAAT
GAAGAAATCG ATATAAGCGT TCCCGGCAAG CGGAATTTGG ATACGGTAAT TTATTCTTGG
CTTTCGGTTT TAAATTACAG TAATTGCGGA TATGAATACC GTTTAACCTT GGAGGCCTTA
AAAGACGACG AATTCTTTTT GCTTTCCGCC CTTGTCCGTA AGGCTAAAGA AAAGCGAATA
GAAGCAGGCG ATGACTCCTT TGCTCTTGAA GCAGAGGCTC CTTTTGCCGA ATTAAATACC
GCAGCAAAGA GGAGTAAAAA CCCCGACGAT ATTTTGCGGT TTCCTGCAAC CCTTGCGGCT
TATTTACCTG CTCTTTCGAT TCTTGCAATT AAAAAAAATG TGATGCTTTC GCGGGAAGAA
ACGGGGCTCT TTTTACAAAA GTCGGCAAAG CTTTTACAGC GTTTCGGCAT CGATATAGTT
TTACCTAAAA GCCTAAAAAA TATTTTGACT CCCAAACCTG TCATAAGCGT AAAATCCGTA
AAGGGAGCAG GAAATATAGT TTCATTTTTA AACATTGATG ATGTTCTTTC TTATGACCGA
GCCCTAATGT TGGGAGATAC CTTAATAGAT ATAGACGAAT TTAAAAAGCT CTTTTTAAAT
AAATCGGGCT TGGTAAAATT TAACGATCAG TTTCTTTTAC TTGATCCCGA AGAAGTTGCC
AAGATGTTAA AGGCCCTTGA AAAGCCGGCA GATACAAAAG AGGTCTTACA AGCGGTTCTT
TCGGGAAACG CAGTCTGTTC CAAACCCGCC TCAGAAATTA TCAAGAATAT TTTCAGGCAA
GAAGAGGTTC CCGTTCCTCA AAATCTAAAT GCGGAATTAA GGCCTTATCA AAAACAAGGC
TACCGCTGGC TATATGCAAA CATCAAAAGC GGCTTCGGCT GCCTTTTGGC CGACGACATG
GGCTTGGGCA AAACCGTACA GATTATAAGT TTAATGCTTA GCTTTAAAAA TTCAAAAGAA
GCGGAATCCC CTTTTTTGGT TATAGCCCCA GCAAGCCTTC TTTCAAACTG GGAACACGAA
ATAGCAAAAT TCGCTCCTTC TCTTAAAACC GCCGTTTATC ATGGGGCAGG GCGTAAGTTC
ACTACCGAAG CAGATGTAAT AATAAGCACA TATCAAACTA TGCAAAAAGA TATAGAAAAA
TTAAAAGACA AAAAAGTTTT TTGCATTATT TTAGATGAAG CTCAGGCTAT AAAAAATTCC
GGAACAAAAA AGGCTCATGC CGTAAAGGCA ATTCAGGCGA GGGGCAGAGT TGCTCTTACA
GGGACACCGG TTGAAAACAA CCTTGAAGAT ATGCGTTCCA TATTCGACTT TTTTCTTCCC
GGTTATTTAG GTACGGCCGA CGAGTTTAGA AAAAAATGGC GTATTCCGAT TGAGCTTCAT
AATTCGGAAA CCGAAGCGGA TGATCTAAAA AAAATTACTT CACCCTTTTT GCTCCGCCGT
CTAAAGACCG ATCCCAAGGT TATCTCTGAT TTGCCGGATA AGATAATTAC AAATCAATAT
TGCAATTTGA CGCCTGAGCA GCTGGCAATT TATGAAAACC TTGTAGAAAC GGAATTGCAC
AAGGTGATGG GAGCCGAAAC TAAGATTGAA AGACAGGCCT ATGTTCTAAA ACTTTTAACG
GCCTTAAAAC AGGTGTGCAA TCATCCGAGA GCCTATGATA AGGAAACTCC AATCGAAATG
AAATACTCAG GCAAGGCCGC TGTCCTCATC GAGCTTTTAA ACGAAATAAT TTCTTCGGGA
GAAAAGGCAA TTATTTTTAG CCAATATGTA GGCACCCTCG ACATTTTAAA AAACATTATT
CAAAAAGAAT TGGGAACCGA ACCTCTTTTA CTCCACGGTC AAATGCCCGC CTCAAAAAGA
AAAAAGGCTG TAGAGGTTTT TCAAACGGAT TCTGCTTACC GCATCTTTTT AATTTCTCTT
AAGGCGGGAG GTACCGGCCT TAACTTGACG GCAGCTAACA GGGTAATTCA CTTTGACCTT
TGGTACAATC CCGCAGTTGA AGATCAGGCC ACAGACAGGG CATTTAGAAT AGGACAAACA
AAAAACGTCT TCGTGCACCG CCTTATCTGC TCCGGTACCT TTGAAGAAAA AATTGATGAG
ATGATTCAAA AAAAGCGGGA AATAAGCGGT ATGAGCATTT CCGCAGGTGA AACATGGATT
TCAAAATTGA GCAATGAAGA ATTGGCCGGT CTTTTTAAGA GTTAA
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| Protein sequence | MARQTYGTTP WGAWFLDMLK AYDDSGRLSR GKTYANTGKV NSLVVNGQTA GAKVKGNYSP
WYHVYFKFPP LSKTNKTAIR SILEKHPIEL AGLRAGIMSP ALIEALKKKK VRLIPARWNL
IERDCTCPDS GDPCKHMAAV LFLLAKEIDH DPRLLFKLAG FDIDSINVPE TEVFEKGGTQ
KLGLLQEQPV PLSLRKNETL NKAADLSSDS SVSETAHNSC ELQSPLKFSL GESYLPLITN
ILPPEPNFSS SDFIIKLTEF YHKAVLNYGL NFYGQEKQSE KQEEKSVNPF LFARVKVNID
NIRKQKRAFP LEPKSPLTVN IKLGETHEIN QTLLQAQNFY KTRNSLNEMS PSVKILFSLF
ALAGKLIQSS AFIPAVFTEN KKLFIFWKSL SASSEIKADI FKFAASLTKD FFLPVGKWGR
LYCAELLLTA LLTEYAASLK FFPNKSYTKD KEIDKLFFLN EEIDISVPGK RNLDTVIYSW
LSVLNYSNCG YEYRLTLEAL KDDEFFLLSA LVRKAKEKRI EAGDDSFALE AEAPFAELNT
AAKRSKNPDD ILRFPATLAA YLPALSILAI KKNVMLSREE TGLFLQKSAK LLQRFGIDIV
LPKSLKNILT PKPVISVKSV KGAGNIVSFL NIDDVLSYDR ALMLGDTLID IDEFKKLFLN
KSGLVKFNDQ FLLLDPEEVA KMLKALEKPA DTKEVLQAVL SGNAVCSKPA SEIIKNIFRQ
EEVPVPQNLN AELRPYQKQG YRWLYANIKS GFGCLLADDM GLGKTVQIIS LMLSFKNSKE
AESPFLVIAP ASLLSNWEHE IAKFAPSLKT AVYHGAGRKF TTEADVIIST YQTMQKDIEK
LKDKKVFCII LDEAQAIKNS GTKKAHAVKA IQARGRVALT GTPVENNLED MRSIFDFFLP
GYLGTADEFR KKWRIPIELH NSETEADDLK KITSPFLLRR LKTDPKVISD LPDKIITNQY
CNLTPEQLAI YENLVETELH KVMGAETKIE RQAYVLKLLT ALKQVCNHPR AYDKETPIEM
KYSGKAAVLI ELLNEIISSG EKAIIFSQYV GTLDILKNII QKELGTEPLL LHGQMPASKR
KKAVEVFQTD SAYRIFLISL KAGGTGLNLT AANRVIHFDL WYNPAVEDQA TDRAFRIGQT
KNVFVHRLIC SGTFEEKIDE MIQKKREISG MSISAGETWI SKLSNEELAG LFKS
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