Gene PG2014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPG2014 
Symbolcas1 
ID2553099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePorphyromonas gingivalis W83 
KingdomBacteria 
Replicon accessionNC_002950 
Strand- 
Start bp2104579 
End bp2105595 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content43% 
IMG OID637150592 
ProductCRISPR-associated Cas1 family protein 
Protein accessionNP_906082 
Protein GI34541603 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA CATATTATCT ATTTAACCCC GGCGAATTGT CCCGAAAAGA CAATACCATC 
CGCTTTGTCC CGATCCAAGA GGGAGAAAAC GGACAGGAAC AAGCAGGACA AGCCCGCTAC 
ATTCCCGTTG AAGGAATTAG CGATTTCTAT GTGTTTGGCT CTTTGAGGGC CAATAGCAGC 
TTATACAATT TCCTTGGGAG CAATGACATC GCAGTCCATT TTTTCGATTA TTACGAAAAT 
TACACCGGTT CTTTTATGCC TCGCGACTTC TTGCTATCAG GAAAAATGCT CCTGGCACAG 
GCTTCGGCAT ATAAGAATAA GAAGAAACGA TTGTTTCTGG CCAGAAAGTT TATTGAAGGT 
GCAGCCTCTA ATATGCAGAA AAACTTAGCC TACTACAACA ATCGGGGAAA AGATATGCAG 
CCGATGATGG AGCTAATCGA CAAGTATTCA TTGCGCCTGA AGGAAACGAC AACGATAGAG 
GCTCTTATGG GTATCGAAGG TAATATCCGG CAAGCATACT ATGATGCTTT TAACCTTATT 
ATCGATCCTT TCGAAATGGG GGTGCGGAGC AAACAGCCTC CTCAAAATGA GGTAAATGCA 
CTCATCTCTT TTGGGAATAT GATGTGCTAC ACCTTATGCC TGAAGGCAAT TCATCAAAGC 
CAACTGAATC CCACGATCAG CTTCCTACAT ACGCCCGGGG AGAGGCGATA CTCTCTATGC 
TTGGATATAT CGGAAGTGTT TAAGCCCATA TTGGTAGATC GCACAATCTT CAAAGTCATG 
AACAAGAGAA TAATACAGGC CAAACACTTC GACAAGCAAC TCAATAAATG TATCCTAAAT 
CCATCGGGAA AGAAGCTTTT CGTACAAGCC TTCGAAGAAA GACTTTCTGA AACGATTCGA 
CATCGCAAGC TCAATCGTTC CGTCAGTTTC AGGCACCTGG TCAAGCTCGA ATGCTACAAA 
ATAGCCAAAG ACATTCTTGG GATCGAAGAG TATCAACCCT TTAAGATGTA TTGGTAA
 
Protein sequence
MKKTYYLFNP GELSRKDNTI RFVPIQEGEN GQEQAGQARY IPVEGISDFY VFGSLRANSS 
LYNFLGSNDI AVHFFDYYEN YTGSFMPRDF LLSGKMLLAQ ASAYKNKKKR LFLARKFIEG 
AASNMQKNLA YYNNRGKDMQ PMMELIDKYS LRLKETTTIE ALMGIEGNIR QAYYDAFNLI 
IDPFEMGVRS KQPPQNEVNA LISFGNMMCY TLCLKAIHQS QLNPTISFLH TPGERRYSLC 
LDISEVFKPI LVDRTIFKVM NKRIIQAKHF DKQLNKCILN PSGKKLFVQA FEERLSETIR 
HRKLNRSVSF RHLVKLECYK IAKDILGIEE YQPFKMYW