| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1721 |
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| Symbol | vacB |
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| ID | 2552507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 1810424 |
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| End bp | 1812532 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637150334 |
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| Product | ribonuclease R |
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| Protein accession | NP_905829 |
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| Protein GI | 34541350 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGG AGGAGATGCG CAATGCCATT TTGGACATAT TCCAAAGCAA TCCTCAGAGC
GTGATGAACT ACAAGCAGGT AAGCCATCTG ATGGGAGTAG AAGCTGCACC ACAAAAGCTA
ATGGTGAACT CCCTGATGGA AGACATGGCT GTGGATGACA TCCTGCATGA GATAGAGCGC
GGACGCTATC GGTACAATGC CTTGGGATTG ATTGTCATAG GCACTTTTGA GCGTCGGTTC
AATGGCCGCA ATTCGTTTAT TCCCGAAGGG GGCGGAACGC CCATTTTCAT TGCCGAAAGA
AATTCGGCAC ATGCCATGGA CGGTGACAAA GTGAAAGTAC AACTCTTTGC CAAACGTCGT
GGTCGCGCGC CGGAAGCCGC CGTGATCGAG ATCATAGAAC AGAAGCAGGC CACTTTCGTC
GGCAAGATCC AAATCAATAG AGACTTTGCT TTCCTTGTTA CGGAAGATCG CACCTTAGCG
AATGATATTT TCATCCCCAA GGACAACCTC GGCAACGCCA AAAACGGCGA TAAGGTAATA
GTCCGAATAC TCGAATGGCC GGAGCAATCC AAGAATCCCA TCGGAGAGGT ACAAGCCGTA
TTGGGACCGG CCGGAGACAA CGATGCCGAG ATGAATGCCA TTTTGGCCGA ATTCGGATTG
CCTTATGTCT ATCCCCAAGA GGTGGAAGAG GCAGCCGACC GTTTGGATGG GAAGATCACA
GAAGAAGAGC TTGCCCGAAG AGAAGATTTT CGGTCGATAC TCACCTTCAC CATCGACCCG
AAGGATGCCA AGGACTTCGA TGATGCCATA TCGTTCCGTC CGCTGGAGGA TGATTGCTAT
GAGGTGGGCG TACATATCGC CGATGTCTCG CACTACGTAA CCGAGGGCGG GATCATAGAT
CAGGAAGCAT ACAACCGTGC CACAAGTATC TATCTCGTGG ATCGCACCAT CCCGATGCTC
CCCGAACGCC TCTGCAACGA CCTTTGTTCC CTCCGCCCCG ACGAAGAAAA ATATGCCTAT
AGCTGCATAT TCCGGATGAA TGACGAAGCC AAAGTATTGG ATTATCGCAT CTGCCACTCC
GTGATCAAGA GCGACCGCCG GTTCGCTTAC GAAGAGGCAC AAGCCGTGAT CGAGACCGGC
GAAGGCGACT GCAAGGAGGC CATTCTCAAA CTCAACGAGC TGGCACAGCG ACTTCGCAAA
GAACGATTCC AAAACGGAGC GATTGCTTTC GAAAGAAAAG AAGTTCGCTT CGAAATAGAT
GAGAAAGGTC GTCCTCTGGG TGTAATCGTG AAGGAGAGCA AGGAAGCCAA CAAGCTAATC
GAAGAGTTCA TGCTTCTGGC CAATAGGACG GTAGCCCGAC ATATAGGCGA AGAGACCCAA
GGGAAACGAG CCAAGACCTT CGTTTATCGT ATCCACGACC TGCCCGATCC CGACAAATTG
GAGACCTTGT CGGACTTCAT CCGCCGATTC GGTTACAAGT TGCGCACCAC AGGTAGTAAT
GTGGAGGTAA GCAAGAGCAT CAATTCGCTT CTGGACAACA TCCAAAACAA GCCGGAAGAA
AATTTGATCT CTACCGTTGC CATACGCTCC ATGGCTAAGG CCATTTACTC GACGGACAAC
ATCGGCCACT ACGGATTGGC ATTCGATTTC TACACCCACT TCACTTCGCC CATTCGTCGC
TATCCGGACT TGATGGTGCA CCGATTGCTG ACGAAATACC TTTCGGGTGG AAGTTCCGTA
GACAAAAATG ACTATGAGGA AAAGTGCAAG CATTCATCTG CAATGGAGCA ATTGGCAGCT
TCGGCCGAAC GCGCTTCCAT CAAATACAAA CAGGTGGAGT TTATGTCCGA ACACCTCGGC
AAAGTATTCG ATGGTGTAAT ATCGGGCGTC ACCGAATGGG GATTGTACGT AGAGCTGAAG
GAAAATATGT GCGAAGGTCT CATACCCATC CGCTGTCTCG ACGACGACTA CTACGAGTAC
GACGACAAGA ACTTCTGCCT CATCGGGCGT CGCTATCGTC ACCGCTACAG TCTGGGCGAT
GCCATCACCG TACGTGTTGC CCAAGCCAAT CTGGACAGAA AGCAACTCGA CTTCGAACCC
GTAAGCTAA
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| Protein sequence | MTKEEMRNAI LDIFQSNPQS VMNYKQVSHL MGVEAAPQKL MVNSLMEDMA VDDILHEIER
GRYRYNALGL IVIGTFERRF NGRNSFIPEG GGTPIFIAER NSAHAMDGDK VKVQLFAKRR
GRAPEAAVIE IIEQKQATFV GKIQINRDFA FLVTEDRTLA NDIFIPKDNL GNAKNGDKVI
VRILEWPEQS KNPIGEVQAV LGPAGDNDAE MNAILAEFGL PYVYPQEVEE AADRLDGKIT
EEELARREDF RSILTFTIDP KDAKDFDDAI SFRPLEDDCY EVGVHIADVS HYVTEGGIID
QEAYNRATSI YLVDRTIPML PERLCNDLCS LRPDEEKYAY SCIFRMNDEA KVLDYRICHS
VIKSDRRFAY EEAQAVIETG EGDCKEAILK LNELAQRLRK ERFQNGAIAF ERKEVRFEID
EKGRPLGVIV KESKEANKLI EEFMLLANRT VARHIGEETQ GKRAKTFVYR IHDLPDPDKL
ETLSDFIRRF GYKLRTTGSN VEVSKSINSL LDNIQNKPEE NLISTVAIRS MAKAIYSTDN
IGHYGLAFDF YTHFTSPIRR YPDLMVHRLL TKYLSGGSSV DKNDYEEKCK HSSAMEQLAA
SAERASIKYK QVEFMSEHLG KVFDGVISGV TEWGLYVELK ENMCEGLIPI RCLDDDYYEY
DDKNFCLIGR RYRHRYSLGD AITVRVAQAN LDRKQLDFEP VS
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