| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1640 |
|---|
| Symbol | dinF |
|---|
| ID | 2552749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | - |
|---|
| Start bp | 1720025 |
|---|
| End bp | 1721335 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637150264 |
|---|
| Product | DNA-damage-inducible protein F |
|---|
| Protein accession | NP_905764 |
|---|
| Protein GI | 34541285 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGC GCATCCTGCG CTTGGCTATT CCGAATATCA TCTCCAACAT TACCGTACCG
CTCCTCTCCA TCGTGGATGT AGGGCTGGCC GGTCGTATGG ACACGGCCGA CTCTATCGGG
GCAGTGGCTG TGGCTTCGGG GGTGGTCAAT TTCGTCTTTT GGCTCTTCGC CTTCCTCCGT
ATGGGGACTA CGGGATTCAC GGCACAGGCT TTCGGGCGTA GCGATGTGCG AGCCATCACA
CGCTATCTGG CACGTGGCAT CGCGATGGCA GTTGTCGCAG CCCTGCTTCT TCTCATAGCA
GCTCCTCTGA CAGAACGCTT CGGGTATCTG CTGGCTTCGG GTCAGGAGAC CATCGGACGA
GAGGCACGCG AATATATCCG CATCGCTCTG TGGGGAGCGC CCGCAGCCCT GCTCGTCTAT
GTCTTCAACG GCTGGTATGT GGGGATGCAG GACACACGCG TTCCGATGGT TGTAGCCATC
GTTTCCAATA TGGTCAATAT CGGCCTGAGT ATTTTCTTCG TACAGGGACT TGATATGAGA
GTGGGAGGGC TTGCCGCCGG AACGATCGCT GCCCAATATG TCGGTCTGGC ATTACTCTCG
GGCATTGCCT TTTTTCGCTA CCGACGCGTA CTGCGCTTTT TCCGCGCAAG CAGCCTGACA
GATACTTCGG GCTACGGAGC CTACCTGCGC ACCGGAGGCG ACCTTTTTGT TCGCACCGCC
TTGCTCGGTA CGGTGACCCT CTTTTTCACC TCTGCGTCCT CTGCTATGGG AGAGATCACT
GTGGCAGCAA ATGCTCTGCT GATGCAACTC TTCACCCTCT TCTCCTACTT TATGGACGGA
TTCGCCTACG CCGGCGAAGC ACTTACGGGA CGATACATAG GTGCACGCCG GTCGGACGAA
TTGCGCCTGA TGATCCATCG CCTTTTTCGC ATCGGGACGG TCGTCTCCCT CATGGCCACC
TTGCTCTATC TGCTGTTCCC GGCCGCTTTG CTTTCGGTGC TGAGTGACAA ATACGAAGTG
ATAGAGCATG CTCGCCGTTT TGCTTTCTGG GCAGGAGTGG TACCGATCGT CTCCTTTGCC
GCTTTCCTGT GGGATGGAGT ATTCGTGGGG GCCACTGCAT CAAAAGCCAT GCGGAGAGCC
ATGACAGCTG CTTTCGTTGT TTTCTTCGCC ACTTTCTTCC TCCTTCGTGG AGCCTTGGGC
GAGACAGCCC TTTGGCTCGC CTTCGTCCTC TACCTCCTCA CGCGCAGCCT GATGCAGACA
GTATGGTACC GCAGGCATTT TTTCGCCACG AATCGTCTGC AAAGGTGCTG A
|
|---|
| Protein sequence | MNRRILRLAI PNIISNITVP LLSIVDVGLA GRMDTADSIG AVAVASGVVN FVFWLFAFLR
MGTTGFTAQA FGRSDVRAIT RYLARGIAMA VVAALLLLIA APLTERFGYL LASGQETIGR
EAREYIRIAL WGAPAALLVY VFNGWYVGMQ DTRVPMVVAI VSNMVNIGLS IFFVQGLDMR
VGGLAAGTIA AQYVGLALLS GIAFFRYRRV LRFFRASSLT DTSGYGAYLR TGGDLFVRTA
LLGTVTLFFT SASSAMGEIT VAANALLMQL FTLFSYFMDG FAYAGEALTG RYIGARRSDE
LRLMIHRLFR IGTVVSLMAT LLYLLFPAAL LSVLSDKYEV IEHARRFAFW AGVVPIVSFA
AFLWDGVFVG ATASKAMRRA MTAAFVVFFA TFFLLRGALG ETALWLAFVL YLLTRSLMQT
VWYRRHFFAT NRLQRC
|
|---|
| |