Gene PG1253 details

Gene Information

• Locus tag: PG1253
• Symbol: ligA
• ID: 2553175
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: -
• Start bp: 1329687
• End bp: 1331696
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637149928
• Product: DNA ligase, NAD-dependent
• Protein accession: NP_905437
• Protein GI: 34540958
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAAAAGA TAGTTCCCCC TGCTGTCCGA ATAGAAGAGC TGCGCCGCAT TCTGCGTGAG 
CACGAATACA GGTATTACGT TCTCTCATCT CCGACTATCG ATGACTTCGA GTATGACGCC 
ATGATGAAGC AGCTTGAGGA GCTGGAACGG GAATACCCCG AATGGGATAG TCCTGACTCG 
CCTACGCATC GTGTCGGAAG CGACAAAACG GAAGGATTCG CTTCCGTTCG CCACGACAGA 
CCGATGCTTT CCCTCAGCAA TACATATAAT TACGATGAGA TTGGAGATTT TTATCGTCGC 
GTGTCCGAAG GACTTCAAGG CGCACCTTTC GAAATCGTTG CAGAGCTGAA ATTCGACGGA 
CTTTCCATTT CGCTTATCTA CGAAGATGGT ATGCTGGTGC GTGCCGTTAC CAGAGGCGAT 
GGAATAATGG GAGATGATGT AACGGCTAAT GTCCGTACCA TCCGATCTGT CCCTTTGCGA 
CTAAGAGGCG ATGATTATCC CCGTATGTTG GAAGTTCGAG GAGAGATATT GCTCCCTTTC 
AAGGAATTCG ATCGGATCAA TGCCCAACGG GAGGCCGAAG GGGAGCCTCT ATTTGCCAAT 
CCGCGCAATG CCGCTTCCGG TACCATTAAG CAGCTCGACC CCCATATCGT AGCCGGACGA 
AACTTGGATG CTTATTTCTA CTATCTATAT AGCGATGAAC CTTTGGCAGA GAATCATTAC 
GACCGACTGA TGCAGGCGCG TCAGTGGGGT TTCAAAGTCT CTGATGCCGT CACACTATGC 
TGTAGTAAGG AGGAGGTATA TGCCTTTATC GATCGTTTCG ATACCGAGCG TCTGACATTG 
CCCGTAGCTA CTGATGGTAT TGTCCTCAAG GTAAATGCTC CGGCTCAGCA GGATTTGCTT 
GGCTTTACGG CCAAAAGCCC ACGTTGGGCT ATTGCCTATA AGTATCAGGC CGAGCGAGTA 
CGTACTCGTC TGCAGCATGT AAGCTATCAA GTAGGGCGTA CGGGGGCGGT CACACCTGTG 
GCCAATCTCG ACCCAGTACT GATATCCGGT ACGGTCGTGA GACGCGCCAG CTTGCATAAT 
GCTGATTTTA TTGCGGAGAA AGACCTTCAC GAGGGAGACT TTGTCTATGT GGAAAAGGGT 
GGAGAGATCA TTCCCAAGAT AGTGGGTGTG GATACGGATG CACGCAGTAT CGATGGCAGA 
CCTATAGTTT TTACAGTGCT CTGTCCAGAC TGTGCTACAC CATTGGTACG CGAACAGGGA 
GAAGCTGCCT ATTATTGCCC GAATGCCGAG GGCTGCCCAC AGCAGCAGAA AGGACGGCTC 
GAACACTATT GCGGACGCAA GACGGCAGAC ATCAATATCG GCCCGGAGAC GATCGAATTG 
CTTTATAGCC GCAATATGAT TCGTAACGTT GCTGACTTTT ATGCCCTTAC GGAAGAGCAG 
CTACTCACTC TGCCCGGCTT CAAAAAACGG GCTGCTGCCA AACTTTTGGA CAGTATCGAA 
GCCTCCAAAG CCCGTCCGTA TCAGGCCATT TTGTTCGGAT TAGGTATTCG CTTTGTCGGA 
GAAACCGTAG CCAAGAAACT TGCTGCGGTC TATCCTTCTA TCGATGCCCT GGCTGCTGCG 
ACGAGCGAGG AATTAGTACA GATAGACGAG ATCGGGGAAA GAATAGCTGC TGCTGTACTT 
CATTTTTTCA GCCTTCGGCA GAACAGGGAG TTGATCGAAC GACTTCGTTT GGCCGGTGTA 
TCGTTGGAAG CTGAGACAGT TTCCGTGGCG GTTTCCAATC GTTTAGCCGG AAAAACGGTT 
GTTATCAGTG GTACATTTGA AAAGCGTAGT CGTGATGAGT ACAAAGCTAT GGTAGAGGAC 
AATGGCGGAC GTATGGCCGG ATCGGTTTCG TCCAAGACCT CTTTCATTCT TGCCGGATCG 
GATATGGGGC CGAGTAAGAG AGAGAAAGCA GAGAAGCTCG GTGTGCGGCT GATGAGTGAA 
GAGGAATTTC TCCGTCTGAT AGAAGAATAG 

 

Protein sequence

MEKIVPPAVR IEELRRILRE HEYRYYVLSS PTIDDFEYDA MMKQLEELER EYPEWDSPDS 
PTHRVGSDKT EGFASVRHDR PMLSLSNTYN YDEIGDFYRR VSEGLQGAPF EIVAELKFDG 
LSISLIYEDG MLVRAVTRGD GIMGDDVTAN VRTIRSVPLR LRGDDYPRML EVRGEILLPF 
KEFDRINAQR EAEGEPLFAN PRNAASGTIK QLDPHIVAGR NLDAYFYYLY SDEPLAENHY 
DRLMQARQWG FKVSDAVTLC CSKEEVYAFI DRFDTERLTL PVATDGIVLK VNAPAQQDLL 
GFTAKSPRWA IAYKYQAERV RTRLQHVSYQ VGRTGAVTPV ANLDPVLISG TVVRRASLHN 
ADFIAEKDLH EGDFVYVEKG GEIIPKIVGV DTDARSIDGR PIVFTVLCPD CATPLVREQG 
EAAYYCPNAE GCPQQQKGRL EHYCGRKTAD INIGPETIEL LYSRNMIRNV ADFYALTEEQ 
LLTLPGFKKR AAAKLLDSIE ASKARPYQAI LFGLGIRFVG ETVAKKLAAV YPSIDALAAA 
TSEELVQIDE IGERIAAAVL HFFSLRQNRE LIERLRLAGV SLEAETVSVA VSNRLAGKTV 
VISGTFEKRS RDEYKAMVED NGGRMAGSVS SKTSFILAGS DMGPSKREKA EKLGVRLMSE 
EEFLRLIEE