| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0594 |
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| Symbol | rpoD |
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| ID | 2552433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 652188 |
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| End bp | 653051 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637149356 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | NP_904881 |
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| Protein GI | 34540402 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCAAC TTAAAATTTC CAAGTCGATC ACGAATCGTG AAAGCGCGTC TCTGGACAAG
TATCTGCAGG AGATCGGTCG CGAGGACCTG ATCTCGGTCG AAGAAGAAGT AGAGTTGGCG
CAAGCCATTA AACGCGGTGA TCGCAAAGCT CTTGAAAAGC TGACTCGTGC CAATCTTCGT
TTCGTAGTAT CCGTAGCCAA ACAATACCAG AATCAGGGTC TCAGTTTGCC GGACTTGATC
AATGAAGGAA ACCTCGGATT GATCAAAGCG GCAGAGAAAT TCGACGAAAC GCGCGGTTTT
AAGTTTATCT CGTATGCCGT ATGGTGGATC CGCCAGTCCA TCCTGCAAGC ATTGGCCGAG
CAGTCTCGTA TCGTCCGCCT GCCACTGAAT CAGGTGGGAA CACTCAACAA GATCATCAAG
GCCCAGCAGA AATTCGAGCA GGAGAATGAG CGTCGCCCCT CGTCAGCAGA GTTGGCTAAG
GAGCTGGACA TCGCAGAAGA CAAAATTGCC GATACGATGA AAGTATCCGG ACGGCATATC
TCTGTGGATG CTCCTTTCGT GGAAGGTGAA GACAACAGCC TGCTGGATGT ACTCGTCAAT
GAGGATACCC CCAATACGGA CAAGTCGCTG ATCAATGAAT CGCTGGCCGT TGAGATAGAA
AGAGCTTTGT CCACACTGAC GGAGCGCGAA GCAGAGATCG TGAAGCTGTT CTTCGGCATT
GCCGGCTGTC AAGAGATGAC ACTGGAAGAA ATCGGCGACA AATTCGGTCT CACCCGCGAA
CGCGTCCGCC AGATAAAAGA GAAGGCTATT CGCCGTTTGC GACAGAGCAA CAAGTGCAAG
AATCTGAAAG GTTATCTCGG CTAA
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| Protein sequence | MRQLKISKSI TNRESASLDK YLQEIGREDL ISVEEEVELA QAIKRGDRKA LEKLTRANLR
FVVSVAKQYQ NQGLSLPDLI NEGNLGLIKA AEKFDETRGF KFISYAVWWI RQSILQALAE
QSRIVRLPLN QVGTLNKIIK AQQKFEQENE RRPSSAELAK ELDIAEDKIA DTMKVSGRHI
SVDAPFVEGE DNSLLDVLVN EDTPNTDKSL INESLAVEIE RALSTLTERE AEIVKLFFGI
AGCQEMTLEE IGDKFGLTRE RVRQIKEKAI RRLRQSNKCK NLKGYLG
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