Gene PG0104 details

Gene Information

• Locus tag: PG0104
• Symbol: topB-1
• ID: 2552210
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: +
• Start bp: 125481
• End bp: 127508
• Gene Length: 2028 bp
• Protein Length: 675 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637148918
• Product: DNA topoisomerase III
• Protein accession: NP_904451
• Protein GI: 34539972
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 4
• Fosmid unclonability p-value: 0.0000375285
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGATAGTCT GTATTGCCGA AAAGCCCAGT GTGGGGCGTG AGATCGCTGC TGTACTCGGT 
GCCACCAAAG CCTATAAAGG CTATATGGAG GGCAACGGTT ATCAGGTGAC ATGGACTTTC 
GGACATCTCT GTGCCCTCAA AGAACCTCAC GACTATGCAC CCGAATGGAA GCGATGGAGT 
ATCAGTTCTC TACCGATGAT ACCACTGCGA TTTGGCATCA AACTCATCGA TAGCGATAGT 
ATTCGGGAGC AATTCGGCAC CATCGAAAGG CTTGTCCATG AAGCGGATAT GGTCGTGAAC 
TGCGGTGATG CCGGACAGGA GGGAGAGCTG ATCCAGCGTT GGGTATTGCA GAAAACGGGC 
TGCACATGTC CCGTGCGGCG ACTTTGGATA TCTTCTCTTA CTGAGGAGTC TATCCGTGAA 
GGCTTTGCGA GGCTGCGCGA CAGCGAAGAA TTTCATTCCC TATATGAGGC CGGACTGGCT 
CGTGCCATAG GCGACTGGCT ATTGGGTATG AACGCTACGC GTCTTTATAC GCTCCGCTTC 
GGGGGCAACC GACAGGTACT TTCCATCGGA CGTGTACAGA CTCCGACTCT CGCCCTTATT 
GTCAGGAGAC AGCACGAGAT CGAGCACTTC ACCCCTGAAG TCTACTGGGA GGTGAAGACC 
ATCTACCGCG ATACGGTGTT CAATGCCACC AAGGGACGCT TTTCCTCGAT CGAGGATGCT 
CGTCGGGAAG TGGAGGTCGT AGCTGGCAGC CCATTTGCTG TTACCTCCGT GGCTACGAAG 
AAAGGTCGGG AGCTGCCGCC TCGACTTTTC GACCTCACCG GCCTACAGGT AGAATGCAAT 
AAGAGGTTTG CCATGACGGC CGATGCTACG CTACGCACCA TCCAATCGCT GTATGAGAAG 
AAGATCACCA CCTATCCGCG CGTGGATACC ACCTATCTGA GCGACGATGT ATTCGAAAAA 
GTGCCGAATA TCCTCCAAGG ACTCTCCGAC TATACCCTGC TCACAGCTCC ACTTCGAAGT 
AGCAAACTAA AAAAAAGCAA GAAGGTATTC GACAATAGCA AGATCACTGA CCACCATGCC 
ATCATTCCCA CCGGTCAGCC ATCCCATGGT ATGTCGGAGG ATGAGCGACG TGTATTCGAT 
CTGGTGGCCC GCCGATTTAT AGCCGTTTTC TATCCGGACT GCATATTCAG CCAGACCACG 
GTCTTGGGAC AAGCAGCTAA GGTAGAGTTC AAAACCACGG GGAAACAGAT ACTGGAGCCC 
GGCTGGCGCA CTGTCTTCAC CGATCCGCAG ACGGACGATG ATGGAGAGAA CAAGGACGAG 
GAGAAAAAAC TGCCAATATT CTCCGAGGGC GAAAGTGGAG TACACACCCC CGAGGTGCAG 
GAGAAAACGA CACAGCCGCC CAAATTCTAT ACCGAAGCTA CACTCCTGCG TGCCATGGAG 
ACGGCCGGCA AGTCGGTCAA GGACGAAGAG CTCCGCGATG CCCTCAAAGA AAATGGCATC 
GGCCGGCCGT CTACGCGAGC AGCCATCATT GAGACTCTCT TCAAGCGCAA CTACATTTAT 
AAAGAGAAGA AGAATCTCAA AGCTACTCCT ACGGGTATGT CTTTGATAGC GACGATCGAC 
TATGACCTGC TCAAGAGTGC CGAGCTGACC GGCCAATGGG AATACAAGCT TCGTCGCATC 
GAGCGAGGCG ACTATTCAGC AGCCGATTTT ATCAATGAAT TGAAAGTACT CCTGACCCAT 
CTGATTCCTA ATGTACTCAA GAGCAACTCT TCCGTACTCC TGTCAGAGCC GATACCTGCT 
GCTTCGCCTG CTCCCGGCAA AAAGAAAAAG GCTGATAAAC CCATGCAGAA GCAGCTCGAT 
CTCACCTGTC CGGTATGTGG CAAGGGAATC ATTGTCCGCG GTCGGGAAGC TTTCGGTTGC 
AATGCCTTTC GCGAAGGCTG CACCTTCCGA CTTCCATACT CTGAGTATCC TGCATCTCTG 
TCCGACAACG AATTGGTTGA TCTCCTTTCT TCGCAAAAAG GACACTAA 

 

Protein sequence

MIVCIAEKPS VGREIAAVLG ATKAYKGYME GNGYQVTWTF GHLCALKEPH DYAPEWKRWS 
ISSLPMIPLR FGIKLIDSDS IREQFGTIER LVHEADMVVN CGDAGQEGEL IQRWVLQKTG 
CTCPVRRLWI SSLTEESIRE GFARLRDSEE FHSLYEAGLA RAIGDWLLGM NATRLYTLRF 
GGNRQVLSIG RVQTPTLALI VRRQHEIEHF TPEVYWEVKT IYRDTVFNAT KGRFSSIEDA 
RREVEVVAGS PFAVTSVATK KGRELPPRLF DLTGLQVECN KRFAMTADAT LRTIQSLYEK 
KITTYPRVDT TYLSDDVFEK VPNILQGLSD YTLLTAPLRS SKLKKSKKVF DNSKITDHHA 
IIPTGQPSHG MSEDERRVFD LVARRFIAVF YPDCIFSQTT VLGQAAKVEF KTTGKQILEP 
GWRTVFTDPQ TDDDGENKDE EKKLPIFSEG ESGVHTPEVQ EKTTQPPKFY TEATLLRAME 
TAGKSVKDEE LRDALKENGI GRPSTRAAII ETLFKRNYIY KEKKNLKATP TGMSLIATID 
YDLLKSAELT GQWEYKLRRI ERGDYSAADF INELKVLLTH LIPNVLKSNS SVLLSEPIPA 
ASPAPGKKKK ADKPMQKQLD LTCPVCGKGI IVRGREAFGC NAFREGCTFR LPYSEYPASL 
SDNELVDLLS SQKGH