Gene PG0104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPG0104 
SymboltopB-1 
ID2552210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePorphyromonas gingivalis W83 
KingdomBacteria 
Replicon accessionNC_002950 
Strand
Start bp125481 
End bp127508 
Gene Length2028 bp 
Protein Length675 aa 
Translation table11 
GC content53% 
IMG OID637148918 
ProductDNA topoisomerase III 
Protein accessionNP_904451 
Protein GI34539972 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.75285e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAGTCT GTATTGCCGA AAAGCCCAGT GTGGGGCGTG AGATCGCTGC TGTACTCGGT 
GCCACCAAAG CCTATAAAGG CTATATGGAG GGCAACGGTT ATCAGGTGAC ATGGACTTTC
GGACATCTCT GTGCCCTCAA AGAACCTCAC GACTATGCAC CCGAATGGAA GCGATGGAGT
ATCAGTTCTC TACCGATGAT ACCACTGCGA TTTGGCATCA AACTCATCGA TAGCGATAGT
ATTCGGGAGC AATTCGGCAC CATCGAAAGG CTTGTCCATG AAGCGGATAT GGTCGTGAAC
TGCGGTGATG CCGGACAGGA GGGAGAGCTG ATCCAGCGTT GGGTATTGCA GAAAACGGGC
TGCACATGTC CCGTGCGGCG ACTTTGGATA TCTTCTCTTA CTGAGGAGTC TATCCGTGAA
GGCTTTGCGA GGCTGCGCGA CAGCGAAGAA TTTCATTCCC TATATGAGGC CGGACTGGCT
CGTGCCATAG GCGACTGGCT ATTGGGTATG AACGCTACGC GTCTTTATAC GCTCCGCTTC
GGGGGCAACC GACAGGTACT TTCCATCGGA CGTGTACAGA CTCCGACTCT CGCCCTTATT
GTCAGGAGAC AGCACGAGAT CGAGCACTTC ACCCCTGAAG TCTACTGGGA GGTGAAGACC
ATCTACCGCG ATACGGTGTT CAATGCCACC AAGGGACGCT TTTCCTCGAT CGAGGATGCT
CGTCGGGAAG TGGAGGTCGT AGCTGGCAGC CCATTTGCTG TTACCTCCGT GGCTACGAAG
AAAGGTCGGG AGCTGCCGCC TCGACTTTTC GACCTCACCG GCCTACAGGT AGAATGCAAT
AAGAGGTTTG CCATGACGGC CGATGCTACG CTACGCACCA TCCAATCGCT GTATGAGAAG
AAGATCACCA CCTATCCGCG CGTGGATACC ACCTATCTGA GCGACGATGT ATTCGAAAAA
GTGCCGAATA TCCTCCAAGG ACTCTCCGAC TATACCCTGC TCACAGCTCC ACTTCGAAGT
AGCAAACTAA AAAAAAGCAA GAAGGTATTC GACAATAGCA AGATCACTGA CCACCATGCC
ATCATTCCCA CCGGTCAGCC ATCCCATGGT ATGTCGGAGG ATGAGCGACG TGTATTCGAT
CTGGTGGCCC GCCGATTTAT AGCCGTTTTC TATCCGGACT GCATATTCAG CCAGACCACG
GTCTTGGGAC AAGCAGCTAA GGTAGAGTTC AAAACCACGG GGAAACAGAT ACTGGAGCCC
GGCTGGCGCA CTGTCTTCAC CGATCCGCAG ACGGACGATG ATGGAGAGAA CAAGGACGAG
GAGAAAAAAC TGCCAATATT CTCCGAGGGC GAAAGTGGAG TACACACCCC CGAGGTGCAG
GAGAAAACGA CACAGCCGCC CAAATTCTAT ACCGAAGCTA CACTCCTGCG TGCCATGGAG
ACGGCCGGCA AGTCGGTCAA GGACGAAGAG CTCCGCGATG CCCTCAAAGA AAATGGCATC
GGCCGGCCGT CTACGCGAGC AGCCATCATT GAGACTCTCT TCAAGCGCAA CTACATTTAT
AAAGAGAAGA AGAATCTCAA AGCTACTCCT ACGGGTATGT CTTTGATAGC GACGATCGAC
TATGACCTGC TCAAGAGTGC CGAGCTGACC GGCCAATGGG AATACAAGCT TCGTCGCATC
GAGCGAGGCG ACTATTCAGC AGCCGATTTT ATCAATGAAT TGAAAGTACT CCTGACCCAT
CTGATTCCTA ATGTACTCAA GAGCAACTCT TCCGTACTCC TGTCAGAGCC GATACCTGCT
GCTTCGCCTG CTCCCGGCAA AAAGAAAAAG GCTGATAAAC CCATGCAGAA GCAGCTCGAT
CTCACCTGTC CGGTATGTGG CAAGGGAATC ATTGTCCGCG GTCGGGAAGC TTTCGGTTGC
AATGCCTTTC GCGAAGGCTG CACCTTCCGA CTTCCATACT CTGAGTATCC TGCATCTCTG
TCCGACAACG AATTGGTTGA TCTCCTTTCT TCGCAAAAAG GACACTAA
 
Protein sequence
MIVCIAEKPS VGREIAAVLG ATKAYKGYME GNGYQVTWTF GHLCALKEPH DYAPEWKRWS 
ISSLPMIPLR FGIKLIDSDS IREQFGTIER LVHEADMVVN CGDAGQEGEL IQRWVLQKTG
CTCPVRRLWI SSLTEESIRE GFARLRDSEE FHSLYEAGLA RAIGDWLLGM NATRLYTLRF
GGNRQVLSIG RVQTPTLALI VRRQHEIEHF TPEVYWEVKT IYRDTVFNAT KGRFSSIEDA
RREVEVVAGS PFAVTSVATK KGRELPPRLF DLTGLQVECN KRFAMTADAT LRTIQSLYEK
KITTYPRVDT TYLSDDVFEK VPNILQGLSD YTLLTAPLRS SKLKKSKKVF DNSKITDHHA
IIPTGQPSHG MSEDERRVFD LVARRFIAVF YPDCIFSQTT VLGQAAKVEF KTTGKQILEP
GWRTVFTDPQ TDDDGENKDE EKKLPIFSEG ESGVHTPEVQ EKTTQPPKFY TEATLLRAME
TAGKSVKDEE LRDALKENGI GRPSTRAAII ETLFKRNYIY KEKKNLKATP TGMSLIATID
YDLLKSAELT GQWEYKLRRI ERGDYSAADF INELKVLLTH LIPNVLKSNS SVLLSEPIPA
ASPAPGKKKK ADKPMQKQLD LTCPVCGKGI IVRGREAFGC NAFREGCTFR LPYSEYPASL
SDNELVDLLS SQKGH